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INSTALL report for motifbreakR on tokay2

This page was generated on 2020-10-17 11:57:11 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE motifbreakR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1124/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
motifbreakR 2.2.0
Simon Gert Coetzee
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/motifbreakR
Branch: RELEASE_3_11
Last Commit: f864d3a
Last Changed Date: 2020-04-27 14:51:05 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: motifbreakR
Version: 2.2.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/motifbreakR_2.2.0.tar.gz && rm -rf motifbreakR.buildbin-libdir && mkdir motifbreakR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=motifbreakR.buildbin-libdir motifbreakR_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL motifbreakR_2.2.0.zip && rm motifbreakR_2.2.0.tar.gz motifbreakR_2.2.0.zip
StartedAt: 2020-10-16 19:34:56 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:36:51 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 115.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/motifbreakR_2.2.0.tar.gz && rm -rf motifbreakR.buildbin-libdir && mkdir motifbreakR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=motifbreakR.buildbin-libdir motifbreakR_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL motifbreakR_2.2.0.zip && rm motifbreakR_2.2.0.tar.gz motifbreakR_2.2.0.zip
###
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100 1792k  100 1792k    0     0  29.4M      0 --:--:-- --:--:-- --:--:-- 33.0M

install for i386

* installing *source* package 'motifbreakR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
See system.file("LICENSE", package="MotifDb") for use restrictions.
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'motifbreakR'
** help
*** installing help indices
  converting help for package 'motifbreakR'
    finding HTML links ... done
    calculatePvalue                         html  
    finding level-2 HTML links ... done

    encodemotif                             html  
    example.results                         html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpwVBNcb/R.INSTALL2bec319237f7/motifbreakR/man/example.results.Rd:8: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpwVBNcb/R.INSTALL2bec319237f7/motifbreakR/man/example.results.Rd:14: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    factorbook                              html  
    hocomoco                                html  
    homer                                   html  
    motifbreakR                             html  
    motifbreakR_motif                       html  
    plotMB                                  html  
    scoreAllWindows                         html  
    snps.from.file                          html  
    snps.from.rsid                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
See system.file("LICENSE", package="MotifDb") for use restrictions.
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'motifbreakR'
** testing if installed package can be loaded from final location
See system.file("LICENSE", package="MotifDb") for use restrictions.
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'motifbreakR'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'motifbreakR' ...
** testing if installed package can be loaded
See system.file("LICENSE", package="MotifDb") for use restrictions.
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'motifbreakR'
* MD5 sums
packaged installation of 'motifbreakR' as motifbreakR_2.2.0.zip
* DONE (motifbreakR)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'motifbreakR' successfully unpacked and MD5 sums checked