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INSTALL report for mfa on tokay2

This page was generated on 2020-10-17 11:57:05 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE mfa PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1070/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mfa 1.10.0
Kieran Campbell
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/mfa
Branch: RELEASE_3_11
Last Commit: 92de4be
Last Changed Date: 2020-04-27 15:08:24 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: mfa
Version: 1.10.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/mfa_1.10.0.tar.gz && rm -rf mfa.buildbin-libdir && mkdir mfa.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mfa.buildbin-libdir mfa_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL mfa_1.10.0.zip && rm mfa_1.10.0.tar.gz mfa_1.10.0.zip
StartedAt: 2020-10-16 17:23:09 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:24:40 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 90.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/mfa_1.10.0.tar.gz && rm -rf mfa.buildbin-libdir && mkdir mfa.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mfa.buildbin-libdir mfa_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL mfa_1.10.0.zip && rm mfa_1.10.0.tar.gz mfa_1.10.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 22329  100 22329    0     0  86436      0 --:--:-- --:--:-- --:--:-- 88960

install for i386

* installing *source* package 'mfa' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c gibbs.cpp -o gibbs.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o mfa.dll tmp.def RcppExports.o gibbs.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/mfa.buildbin-libdir/00LOCK-mfa/00new/mfa/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'mfa'
    finding HTML links ... done
    calculate_chi                           html  
    create_synthetic                        html  
    cs_sigmoid                              html  
    empirical_lambda                        html  
    log_sum_exp                             html  
    map_branch                              html  
    mcmcify                                 html  
    mfa                                     html  
    plot_chi                                html  
    plot_dropout_relationship               html  
    plot_mfa_autocorr                       html  
    plot_mfa_trace                          html  
    posterior                               html  
    print.mfa                               html  
    summary.mfa                             html  
    to_ggmcmc                               html  
    transient                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'mfa' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c gibbs.cpp -o gibbs.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o mfa.dll tmp.def RcppExports.o gibbs.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/mfa.buildbin-libdir/mfa/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mfa' as mfa_1.10.0.zip
* DONE (mfa)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'mfa' successfully unpacked and MD5 sums checked