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INSTALL report for metavizr on tokay2

This page was generated on 2020-10-17 11:57:03 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE metavizr PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1045/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metavizr 1.12.0
Hector Corrada Bravo
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/metavizr
Branch: RELEASE_3_11
Last Commit: 626d3bf
Last Changed Date: 2020-04-27 15:07:24 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: metavizr
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/metavizr_1.12.0.tar.gz && rm -rf metavizr.buildbin-libdir && mkdir metavizr.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metavizr.buildbin-libdir metavizr_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL metavizr_1.12.0.zip && rm metavizr_1.12.0.tar.gz metavizr_1.12.0.zip
StartedAt: 2020-10-16 19:28:58 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:30:56 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 117.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/metavizr_1.12.0.tar.gz && rm -rf metavizr.buildbin-libdir && mkdir metavizr.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metavizr.buildbin-libdir metavizr_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL metavizr_1.12.0.zip && rm metavizr_1.12.0.tar.gz metavizr_1.12.0.zip
###
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100 1239k  100 1239k    0     0  17.3M      0 --:--:-- --:--:-- --:--:-- 18.9M

install for i386

* installing *source* package 'metavizr' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone'
** help
*** installing help indices
  converting help for package 'metavizr'
    finding HTML links ... done
    EpivizMetagenomicsData-class            html  
    EpivizMetagenomicsDataInnerNodes-class
                                            html  
    EpivizMetagenomicsDataTimeSeries-class
                                            html  
    MetavizApp-class                        html  
    MetavizGraph-class                      html  
    MetavizGraphInnerNodes-class            html  
    buildMetavizGraph                       html  
    buildMetavizGraphInnerNodes             html  
    generateSelection                       html  
    metavizControl                          html  
    register-MRexperiment-method            html  
    register-phyloseq-method                html  
    finding level-2 HTML links ... done

    replaceNAFeatures                       html  
    setMetavizStandalone                    html  
    startMetaviz                            html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp4OB7rZ/R.INSTALL242c149f5fca/metavizr/man/startMetaviz.Rd:5: file link 'MetavizApp' in package 'metavizr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp4OB7rZ/R.INSTALL242c149f5fca/metavizr/man/startMetaviz.Rd:21: file link 'MetavizApp' in package 'metavizr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp4OB7rZ/R.INSTALL242c149f5fca/metavizr/man/startMetaviz.Rd:18: file link 'MetavizApp' in package 'metavizr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp4OB7rZ/R.INSTALL242c149f5fca/metavizr/man/startMetaviz.Rd:30: file link 'MetavizApp' in package 'metavizr' does not exist and so has been treated as a topic
    startMetavizStandalone                  html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp4OB7rZ/R.INSTALL242c149f5fca/metavizr/man/startMetavizStandalone.Rd:5: file link 'MetavizApp' in package 'metavizr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp4OB7rZ/R.INSTALL242c149f5fca/metavizr/man/startMetavizStandalone.Rd:22: file link 'MetavizApp' in package 'metavizr' does not exist and so has been treated as a topic
    validateObject                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'metavizr' ...
** testing if installed package can be loaded
Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone'
* MD5 sums
packaged installation of 'metavizr' as metavizr_1.12.0.zip
* DONE (metavizr)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'metavizr' successfully unpacked and MD5 sums checked