Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

INSTALL report for metahdep on malbec2

This page was generated on 2020-10-17 11:55:06 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE metahdep PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1039/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metahdep 1.46.0
John R. Stevens
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/metahdep
Branch: RELEASE_3_11
Last Commit: 633e398
Last Changed Date: 2020-04-27 14:18:55 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: metahdep
Version: 1.46.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL metahdep
StartedAt: 2020-10-16 16:04:42 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 16:04:46 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 4.3 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL metahdep
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘metahdep’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:0:
metahdep.c: In function ‘get_row_indices2’:
/home/biocbuild/bbs-3.11-bioc/R/include/Rinternals.h:620:18: warning: passing argument 5 of ‘metan_binary_search_unique’ makes integer from pointer without a cast [-Wint-conversion]
 #define CHAR(x)  R_CHAR(x)
                  ^
metahdep.c:471:79: note: in expansion of macro ‘CHAR’
     index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
                                                                               ^~~~
metahdep.c:372:6: note: expected ‘char’ but argument is of type ‘const char *’
 SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
      ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o metahdep.so metahdep.o -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-metahdep/00new/metahdep/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (metahdep)