Anand Mayakonda
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/maftools |
| Branch: RELEASE_3_11 |
| Last Commit: c839b79 |
| Last Changed Date: 2020-08-29 17:27:51 -0400 (Sat, 29 Aug 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:59 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE maftools PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 975/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| maftools 2.4.12 Anand Mayakonda
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: maftools |
| Version: 2.4.12 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/maftools_2.4.12.tar.gz && rm -rf maftools.buildbin-libdir && mkdir maftools.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maftools.buildbin-libdir maftools_2.4.12.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL maftools_2.4.12.zip && rm maftools_2.4.12.tar.gz maftools_2.4.12.zip |
| StartedAt: 2020-10-16 17:36:17 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:38:31 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 134.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/maftools_2.4.12.tar.gz && rm -rf maftools.buildbin-libdir && mkdir maftools.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maftools.buildbin-libdir maftools_2.4.12.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL maftools_2.4.12.zip && rm maftools_2.4.12.tar.gz maftools_2.4.12.zip
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install for i386
* installing *source* package 'maftools' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'maftools'
finding HTML links ... done
GISTIC-class html
MAF-class html
OncogenicPathways html
PlotOncogenicPathways html
annovarToMaf html
clinicalEnrichment html
coBarplot html
coOncoplot html
compareSignatures html
drugInteractions html
estimateSignatures html
extractSignatures html
forestPlot html
genesToBarcodes html
genotypeMatrix html
getClinicalData html
getCytobandSummary html
getFields html
getGeneSummary html
getSampleSummary html
gisticBubblePlot html
gisticChromPlot html
gisticOncoPlot html
icgcSimpleMutationToMAF html
inferHeterogeneity html
lollipopPlot html
lollipopPlot2 html
mafCompare html
mafSummary html
mafSurvGroup html
mafSurvival html
math.score html
merge_mafs html
mutCountMatrix html
oncodrive html
oncoplot html
oncostrip html
pfamDomains html
plotApobecDiff html
plotCBSsegments html
plotClusters html
plotCophenetic html
plotEnrichmentResults html
plotOncodrive html
plotSignatures html
plotTiTv html
plotVaf html
plotmafSummary html
prepareMutSig html
rainfallPlot html
read.maf html
readGistic html
setMaf html
signatureEnrichment html
somaticInteractions html
subsetMaf html
finding level-2 HTML links ... done
survGroup html
tcgaCompare html
tcgaDriverBP html
titv html
tmb html
trinucleotideMatrix html
vafCompare html
write.GisticSummary html
write.mafSummary html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'maftools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'maftools' as maftools_2.4.12.zip
* DONE (maftools)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'maftools' successfully unpacked and MD5 sums checked