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INSTALL report for lfa on tokay2

This page was generated on 2020-10-17 11:56:56 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE lfa PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 935/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
lfa 1.18.0
Wei Hao , John D. Storey
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/lfa
Branch: RELEASE_3_11
Last Commit: 6983ef3
Last Changed Date: 2020-04-27 14:51:43 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: lfa
Version: 1.18.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/lfa_1.18.0.tar.gz && rm -rf lfa.buildbin-libdir && mkdir lfa.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=lfa.buildbin-libdir lfa_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL lfa_1.18.0.zip && rm lfa_1.18.0.tar.gz lfa_1.18.0.zip
StartedAt: 2020-10-16 16:54:41 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 16:55:26 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 45.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/lfa_1.18.0.tar.gz && rm -rf lfa.buildbin-libdir && mkdir lfa.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=lfa.buildbin-libdir lfa_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL lfa_1.18.0.zip && rm lfa_1.18.0.tar.gz lfa_1.18.0.zip
###
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100  202k  100  202k    0     0  3029k      0 --:--:-- --:--:-- --:--:-- 3425k

install for i386

* installing *source* package 'lfa' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fastmat.c -o fastmat.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c lfa-init.c -o lfa-init.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c lfa.c -o lfa.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c lreg.c -o lreg.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o lfa.dll tmp.def fastmat.o lfa-init.o lfa.o lreg.o -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/lfa.buildbin-libdir/00LOCK-lfa/00new/lfa/libs/i386
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'lfa'
    finding HTML links ... done
    af                                      html  
    af_snp                                  html  
    center                                  html  
    centerscale                             html  
    hgdp_subset                             html  
    lfa                                     html  
    model.gof                               html  
    pca_af                                  html  
    read.bed                                html  
    read.tped.recode                        html  
    sHWE                                    html  
    trunc.svd                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'lfa' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fastmat.c -o fastmat.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c lfa-init.c -o lfa-init.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c lfa.c -o lfa.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c lreg.c -o lreg.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o lfa.dll tmp.def fastmat.o lfa-init.o lfa.o lreg.o -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/lfa.buildbin-libdir/lfa/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'lfa' as lfa_1.18.0.zip
* DONE (lfa)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'lfa' successfully unpacked and MD5 sums checked