Back to Multiple platform build/check report for BioC 3.11
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

INSTALL report for gpart on tokay2

This page was generated on 2020-10-17 11:56:45 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE gpart PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 763/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gpart 1.6.0
Sun Ah Kim
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/gpart
Branch: RELEASE_3_11
Last Commit: 423d1c2
Last Changed Date: 2020-04-27 15:19:39 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: gpart
Version: 1.6.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/gpart_1.6.0.tar.gz && rm -rf gpart.buildbin-libdir && mkdir gpart.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gpart.buildbin-libdir gpart_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL gpart_1.6.0.zip && rm gpart_1.6.0.tar.gz gpart_1.6.0.zip
StartedAt: 2020-10-16 19:15:32 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:17:46 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 133.6 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/gpart_1.6.0.tar.gz && rm -rf gpart.buildbin-libdir && mkdir gpart.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gpart.buildbin-libdir gpart_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL gpart_1.6.0.zip && rm gpart_1.6.0.tar.gz gpart_1.6.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  492k  100  492k    0     0  8525k      0 --:--:-- --:--:-- --:--:-- 9468k

install for i386

* installing *source* package 'gpart' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c gpart_cpp.cpp -o gpart_cpp.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o gpart.dll tmp.def RcppExports.o gpart_cpp.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/gpart.buildbin-libdir/00LOCK-gpart/00new/gpart/libs/i386
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gpart'
    finding HTML links ... done
    BigLD                                   html  
    CLQD                                    html  
    GPART                                   html  
    LDblockHeatmap                          html  
    SNPinfo                                 html  
    convert2GRange                          html  
    geneinfo                                html  
    geno                                    html  
    gpart-package                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'gpart' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c gpart_cpp.cpp -o gpart_cpp.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o gpart.dll tmp.def RcppExports.o gpart_cpp.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/gpart.buildbin-libdir/gpart/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gpart' as gpart_1.6.0.zip
* DONE (gpart)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'gpart' successfully unpacked and MD5 sums checked