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INSTALL report for gaggle on tokay2

This page was generated on 2020-10-17 11:56:37 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE gaggle PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 650/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gaggle 1.56.0
Christopher Bare
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/gaggle
Branch: RELEASE_3_11
Last Commit: 7e535b6
Last Changed Date: 2020-04-27 14:13:26 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: gaggle
Version: 1.56.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/gaggle_1.56.0.tar.gz && rm -rf gaggle.buildbin-libdir && mkdir gaggle.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaggle.buildbin-libdir gaggle_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL gaggle_1.56.0.zip && rm gaggle_1.56.0.tar.gz gaggle_1.56.0.zip
StartedAt: 2020-10-16 17:59:09 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:59:51 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 42.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/gaggle_1.56.0.tar.gz && rm -rf gaggle.buildbin-libdir && mkdir gaggle.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaggle.buildbin-libdir gaggle_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL gaggle_1.56.0.zip && rm gaggle_1.56.0.tar.gz gaggle_1.56.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  184k  100  184k    0     0  2548k      0 --:--:-- --:--:-- --:--:-- 2844k

install for i386

* installing *source* package 'gaggle' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gaggle'
    finding HTML links ... done
    broadcast                               html  
    connectToGaggle                         html  
    disconnectFromGaggle                    html  
    gaggleInit                              html  
    geese                                   html  
    getCluster                              html  
    getJavaClassName                        html  
    getMatrix                               html  
    getNameList                             html  
    getNetwork                              html  
    getSpecies                              html  
    getTargetGoose                          html  
    getTuple                                html  
    hideGoose                               html  
    newTuple                                html  
    setSpecies                              html  
    setTargetGoose                          html  
    showGoose                               html  
    testGagglePackage                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location

onLoad -- libname: C:/Users/biocbuild/bbs-3.11-bioc/meat/gaggle.buildbin-libdir/00LOCK-gaggle/00new pkgname: gaggle 
path to jar: C:/Users/biocbuild/bbs-3.11-bioc/meat/gaggle.buildbin-libdir/00LOCK-gaggle/00new/gaggle/jars/gaggleRShell.jar 
      script:  gaggle.R $Revision: 4499 $   $Date: 2010-08-10 17:15:03 -0700 (Tue, 10 Aug 2010) $ 
  os version:  Windows Server 2012 R2 
 jvm version:  1.8.0_111 

   You are using the wrong version of Java.
   Please see http://gaggle.systemsbiology.org/docs/html/java

** testing if installed package can be loaded from final location

onLoad -- libname: C:/Users/biocbuild/bbs-3.11-bioc/meat/gaggle.buildbin-libdir pkgname: gaggle 
path to jar: C:/Users/biocbuild/bbs-3.11-bioc/meat/gaggle.buildbin-libdir/gaggle/jars/gaggleRShell.jar 
      script:  gaggle.R $Revision: 4499 $   $Date: 2010-08-10 17:15:03 -0700 (Tue, 10 Aug 2010) $ 
  os version:  Windows Server 2012 R2 
 jvm version:  1.8.0_111 

   You are using the wrong version of Java.
   Please see http://gaggle.systemsbiology.org/docs/html/java

** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'gaggle' ...
** testing if installed package can be loaded

onLoad -- libname: C:/Users/biocbuild/bbs-3.11-bioc/meat/gaggle.buildbin-libdir pkgname: gaggle 
path to jar: C:/Users/biocbuild/bbs-3.11-bioc/meat/gaggle.buildbin-libdir/gaggle/jars/gaggleRShell.jar 
      script:  gaggle.R $Revision: 4499 $   $Date: 2010-08-10 17:15:03 -0700 (Tue, 10 Aug 2010) $ 
  os version:  Windows Server 2012 R2 
 jvm version:  1.8.0_111 

   You are using the wrong version of Java.
   Please see http://gaggle.systemsbiology.org/docs/html/java

* MD5 sums
packaged installation of 'gaggle' as gaggle_1.56.0.zip
* DONE (gaggle)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'gaggle' successfully unpacked and MD5 sums checked