##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:fcoex.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings fcoex_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/fcoex.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘fcoex/DESCRIPTION’ ... OK
* this is package ‘fcoex’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fcoex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Documented arguments not in \usage in documentation object '.plot_one_interaction':
  ‘...’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
find_cbf_modules 34.137  0.723  34.888
get_nets         33.750  0.323  34.125
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  ‘/Users/biocbuild/bbs-3.11-bioc/meat/fcoex.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL fcoex
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘fcoex’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB

** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fcoex)

R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(fcoex)

> 
> test_check("fcoex")
[1] "Number of prospective features =  100"
Round 1 
[1] "first_prime  round ( |s_prime| = 100 )"
   0.0373497   0.02273447   Removed feature  5 
   0.03071133   0.01858721   Removed feature  142 
   0.03427804   0.01786321   Removed feature  20 
   0.08371251   0.01488066   Removed feature  139 
   0.0155058   0.01396718   Removed feature  37 
   0.01445375   0.01224877   Removed feature  162 
   0.01225326   0.009373247   Removed feature  111 
   0.0181835   0.008943111   Removed feature  179 
   0.009361369   0.008424484   Removed feature  43 
   0.02642209   0.008424484   Removed feature  190 
   0.04382159   0.007676308   Removed feature  155 
   0.07947843   0.007429651   Removed feature  74 
   0.06140462   0.006587856   Removed feature  44 
   0.01032053   0.006587856   Removed feature  154 
   0.01072051   0.006362556   Removed feature  91 
   0.0427447   0.005575571   Removed feature  4 
   0.01173844   0.004506593   Removed feature  112 
   0.01430573   0.004506593   Removed feature  151 
   0.01442437   0.004391526   Removed feature  79 
   0.005151403   0.004132786   Removed feature  108 
   0.005151403   0.004132786   Removed feature  141 
   0.01317553   0.003830409   Removed feature  48 
   0.01317553   0.003830409   Removed feature  124 
   0.02706361   0.003830409   Removed feature  133 
   0.02207257   0.003587986   Removed feature  15 
   0.02207257   0.003587986   Removed feature  18 
   0.003633556   0.003587986   Removed feature  88 
   0.02633044   0.003587986   Removed feature  138 
   0.02633044   0.003587986   Removed feature  189 
Round 2 
[1] "first_prime  round ( |s_prime| = 71 )"
   0.04616065   0.02752658   Removed feature  104 
   0.03017533   0.02103363   Removed feature  17 
   0.04800737   0.01908965   Removed feature  38 
   0.02916532   0.01790847   Removed feature  45 
   0.02916532   0.01790847   Removed feature  144 
   0.02779566   0.01561809   Removed feature  68 
   0.01753455   0.01453744   Removed feature  92 
   0.01656382   0.01321344   Removed feature  56 
   0.01656382   0.01321344   Removed feature  181 
   0.01579665   0.01258098   Removed feature  10 
   0.0369118   0.01224877   Removed feature  89 
   0.0369118   0.01224877   Removed feature  165 
   0.03730323   0.01152678   Removed feature  107 
   0.02711217   0.0112316   Removed feature  103 
   0.03342398   0.01060396   Removed feature  29 
   0.04431859   0.009373247   Removed feature  2 
   0.02495629   0.009373247   Removed feature  194 
   0.01344511   0.007676308   Removed feature  176 
   0.02708454   0.006587856   Removed feature  85 
   0.02708454   0.006587856   Removed feature  90 
   0.02498594   0.00564683   Removed feature  180 
   0.02916532   0.004391526   Removed feature  16 
   0.01137309   0.004132786   Removed feature  1 
   0.01753455   0.003587986   Removed feature  12 
Round 3 
[1] "first_prime  round ( |s_prime| = 47 )"
   0.09454811   0.03347788   Removed feature  105 
   0.04952814   0.02800735   Removed feature  34 
   0.03616661   0.02128054   Removed feature  193 
   0.02567026   0.01786321   Removed feature  109 
   0.01805093   0.01207179   Removed feature  42 
   0.02073286   0.008935977   Removed feature  198 
   0.01142804   0.007075971   Removed feature  173 
   0.02420853   0.006187113   Removed feature  185 
   0.007643008   0.005855937   Removed feature  196 
   0.008595008   0.004975612   Removed feature  7 
   0.005394973   0.004391526   Removed feature  81 
   0.008824937   0.004132786   Removed feature  57 
Round 4 
[1] "first_prime  round ( |s_prime| = 35 )"
   0.0440913   0.02800735   Removed feature  60 
   0.02866871   0.02660303   Removed feature  22 
   0.02952345   0.02415423   Removed feature  51 
   0.04749644   0.02094474   Removed feature  27 
   0.01535332   0.01224877   Removed feature  152 
   0.05022302   0.01224877   Removed feature  191 
   0.02208982   0.00821823   Removed feature  97 
   0.03108879   0.006187113   Removed feature  64 
Round 5 
[1] "first_prime  round ( |s_prime| = 27 )"
   0.04749644   0.02094474   Removed feature  99 
   0.03833449   0.004391526   Removed feature  41 
   0.02453469   0.003587986   Removed feature  102 
Round 6 
[1] "first_prime  round ( |s_prime| = 24 )"
   0.03274996   0.02800735   Removed feature  33 
   0.1453687   0.02103363   Removed feature  24 
   0.04949736   0.02103363   Removed feature  120 
   0.02432352   0.01396718   Removed feature  80 
   0.01623567   0.01258914   Removed feature  137 
   0.02984441   0.01224877   Removed feature  182 
Round 7 
[1] "first_prime  round ( |s_prime| = 18 )"
   0.009302871   0.007261307   Removed feature  26 
Round 8 
[1] "first_prime  round ( |s_prime| = 17 )"
   0.01425104   0.01390786   Removed feature  98 
   0.02121795   0.01152678   Removed feature  149 
Round 9 
[1] "first_prime  round ( |s_prime| = 15 )"
   0.04877105   0.02012965   Removed feature  135 
   0.01281803   0.008943111   Removed feature  54 
Round 10 
[1] "first_prime  round ( |s_prime| = 13 )"
   0.02328091   0.01786321   Removed feature  125 
Round 11 
[1] "first_prime  round ( |s_prime| = 12 )"
   0.02790135   0.01258914   Removed feature  30 
══ testthat results  ═══════════════════════════════════════════════════════════
[ OK: 3 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
> 
> 
> proc.time()
   user  system elapsed 
 25.301   0.769  26.069