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INSTALL report for fastseg on tokay2

This page was generated on 2020-10-17 11:56:33 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE fastseg PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 585/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fastseg 1.34.0
Guenter Klambauer
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/fastseg
Branch: RELEASE_3_11
Last Commit: 55c0344
Last Changed Date: 2020-04-27 14:27:52 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: fastseg
Version: 1.34.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/fastseg_1.34.0.tar.gz && rm -rf fastseg.buildbin-libdir && mkdir fastseg.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fastseg.buildbin-libdir fastseg_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL fastseg_1.34.0.zip && rm fastseg_1.34.0.tar.gz fastseg_1.34.0.zip
StartedAt: 2020-10-16 18:07:51 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:08:32 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 40.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/fastseg_1.34.0.tar.gz && rm -rf fastseg.buildbin-libdir && mkdir fastseg.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fastseg.buildbin-libdir fastseg_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL fastseg_1.34.0.zip && rm fastseg_1.34.0.tar.gz fastseg_1.34.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  186k  100  186k    0     0  2809k      0 --:--:-- --:--:-- --:--:-- 3107k

install for i386

* installing *source* package 'fastseg' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_fastseg.c -o R_init_fastseg.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c segment.cpp -o segment.o
segment.cpp: In function 'SEXPREC* segment(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
segment.cpp:60:20: warning: variable 'globalSd' set but not used [-Wunused-but-set-variable]
  double globalMean,globalSd,diff,M2,globalVariance;
                    ^~~~~~~~
segment.cpp:61:9: warning: variable 'oldStatistic' set but not used [-Wunused-but-set-variable]
  double oldStatistic, meanLeft,meanRight,varLeft,varRight;
         ^~~~~~~~~~~~
segment.cpp:62:31: warning: variable 'maxStatistic' set but not used [-Wunused-but-set-variable]
  double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
                               ^~~~~~~~~~~~
segment.cpp:63:40: warning: variable 'maxIdx' set but not used [-Wunused-but-set-variable]
  double newPValue, maxPValue,oldPValue,maxIdx;
                                        ^~~~~~
In file included from segment.cpp:10:
C:/Users/BIOCBU~1/BBS-3~1.11-/R/include/Rmath.h:212:15: warning: unused variable 'Rf_beta' [-Wunused-variable]
 #define beta  Rf_beta
               ^~~~~~~
segment.cpp:65:9: note: in expansion of macro 'beta'
  double beta,nn;
         ^~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c segmentCyberT.cpp -o segmentCyberT.o
segmentCyberT.cpp: In function 'SEXPREC* segmentCyberT(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
segmentCyberT.cpp:59:20: warning: variable 'globalSd' set but not used [-Wunused-but-set-variable]
  double globalMean,globalSd,diff,M2,globalVariance;
                    ^~~~~~~~
segmentCyberT.cpp:60:9: warning: variable 'oldStatistic' set but not used [-Wunused-but-set-variable]
  double oldStatistic,meanLeft,meanRight,varLeft,varRight;
         ^~~~~~~~~~~~
segmentCyberT.cpp:61:31: warning: variable 'maxStatistic' set but not used [-Wunused-but-set-variable]
  double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
                               ^~~~~~~~~~~~
In file included from segmentCyberT.cpp:10:
C:/Users/BIOCBU~1/BBS-3~1.11-/R/include/Rmath.h:212:15: warning: unused variable 'Rf_beta' [-Wunused-variable]
 #define beta  Rf_beta
               ^~~~~~~
segmentCyberT.cpp:63:50: note: in expansion of macro 'beta'
  double newStatisticBptLeft,newStatisticBptRight,beta,nn;
                                                  ^~~~
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o fastseg.dll tmp.def R_init_fastseg.o segment.o segmentCyberT.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/fastseg.buildbin-libdir/00LOCK-fastseg/00new/fastseg/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'fastseg'
    finding HTML links ... done
    coriell                                 html  
    fastseg                                 html  
    fastsegData                             html  
    segPlot                                 html  
    toDNAcopyObj                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'fastseg' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_fastseg.c -o R_init_fastseg.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c segment.cpp -o segment.o
segment.cpp: In function 'SEXPREC* segment(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
segment.cpp:60:20: warning: variable 'globalSd' set but not used [-Wunused-but-set-variable]
  double globalMean,globalSd,diff,M2,globalVariance;
                    ^~~~~~~~
segment.cpp:61:9: warning: variable 'oldStatistic' set but not used [-Wunused-but-set-variable]
  double oldStatistic, meanLeft,meanRight,varLeft,varRight;
         ^~~~~~~~~~~~
segment.cpp:62:31: warning: variable 'maxStatistic' set but not used [-Wunused-but-set-variable]
  double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
                               ^~~~~~~~~~~~
segment.cpp:63:40: warning: variable 'maxIdx' set but not used [-Wunused-but-set-variable]
  double newPValue, maxPValue,oldPValue,maxIdx;
                                        ^~~~~~
In file included from segment.cpp:10:
C:/Users/BIOCBU~1/BBS-3~1.11-/R/include/Rmath.h:212:15: warning: unused variable 'Rf_beta' [-Wunused-variable]
 #define beta  Rf_beta
               ^~~~~~~
segment.cpp:65:9: note: in expansion of macro 'beta'
  double beta,nn;
         ^~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c segmentCyberT.cpp -o segmentCyberT.o
segmentCyberT.cpp: In function 'SEXPREC* segmentCyberT(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
segmentCyberT.cpp:59:20: warning: variable 'globalSd' set but not used [-Wunused-but-set-variable]
  double globalMean,globalSd,diff,M2,globalVariance;
                    ^~~~~~~~
segmentCyberT.cpp:60:9: warning: variable 'oldStatistic' set but not used [-Wunused-but-set-variable]
  double oldStatistic,meanLeft,meanRight,varLeft,varRight;
         ^~~~~~~~~~~~
segmentCyberT.cpp:61:31: warning: variable 'maxStatistic' set but not used [-Wunused-but-set-variable]
  double newStatistic,meanDiff,maxStatistic,DOF,a,b,eps1;
                               ^~~~~~~~~~~~
In file included from segmentCyberT.cpp:10:
C:/Users/BIOCBU~1/BBS-3~1.11-/R/include/Rmath.h:212:15: warning: unused variable 'Rf_beta' [-Wunused-variable]
 #define beta  Rf_beta
               ^~~~~~~
segmentCyberT.cpp:63:50: note: in expansion of macro 'beta'
  double newStatisticBptLeft,newStatisticBptRight,beta,nn;
                                                  ^~~~
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o fastseg.dll tmp.def R_init_fastseg.o segment.o segmentCyberT.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/fastseg.buildbin-libdir/fastseg/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fastseg' as fastseg_1.34.0.zip
* DONE (fastseg)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'fastseg' successfully unpacked and MD5 sums checked