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INSTALL report for exomePeak2 on tokay2

This page was generated on 2020-10-17 11:56:33 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE exomePeak2 PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 572/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
exomePeak2 1.0.0
Zhen Wei
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/exomePeak2
Branch: RELEASE_3_11
Last Commit: 0b57ebf
Last Changed Date: 2020-04-27 15:34:23 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: exomePeak2
Version: 1.0.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/exomePeak2_1.0.0.tar.gz && rm -rf exomePeak2.buildbin-libdir && mkdir exomePeak2.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=exomePeak2.buildbin-libdir exomePeak2_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL exomePeak2_1.0.0.zip && rm exomePeak2_1.0.0.tar.gz exomePeak2_1.0.0.zip
StartedAt: 2020-10-16 19:07:11 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:10:04 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 173.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/exomePeak2_1.0.0.tar.gz && rm -rf exomePeak2.buildbin-libdir && mkdir exomePeak2.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=exomePeak2.buildbin-libdir exomePeak2_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL exomePeak2_1.0.0.zip && rm exomePeak2_1.0.0.tar.gz exomePeak2_1.0.0.zip
###
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100 2303k  100 2303k    0     0  23.6M      0 --:--:-- --:--:-- --:--:-- 25.5M

install for i386

* installing *source* package 'exomePeak2' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'exomePeak2'
    finding HTML links ... done
    ExonPlot                                html  
    GC_content_over_grl                     html  
    GCsizeFactors-methods                   html  
    GLM_inference                           html  
    LibraryType-methods                     html  
    MeripBamFileList-class                  html  
    finding level-2 HTML links ... done

    Parameter-methods                       html  
    Results-methods                         html  
    SummarizedExomePeak-class               html  
    call_peaks_with_GLM                     html  
    consDESeq2_DM                           html  
    consDESeq2_M                            html  
    convertTxDb                             html  
    ctest                                   html  
    decision_deseq2                         html  
    disj_background                         html  
    estimateSeqDepth-methods                html  
    exomePeak2                              html  
    exomePeak2Results-methods               html  
    exomePeakCalling-methods                html  
    exome_bins_from_txdb                    html  
    exons_by_unique_gene                    html  
    exportResults-methods                   html  
    flank_on_exons                          html  
    glmDM-methods                           html  
    glmM-methods                            html  
    mclust_bg                               html  
    normalizeGC-methods                     html  
    plotExonLength-methods                  html  
    plotLfcGC-methods                       html  
    plotReadsGC-methods                     html  
    plotSizeFactors-methods                 html  
    quiet                                   html  
    reads_five_POS                          html  
    reads_five_POS_rev                      html  
    reduce_peaks                            html  
    remove_introns                          html  
    replace_bg                              html  
    scanMeripBAM                            html  
    split_by_name                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'exomePeak2' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'exomePeak2' as exomePeak2_1.0.0.zip
* DONE (exomePeak2)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'exomePeak2' successfully unpacked and MD5 sums checked