Back to Multiple platform build/check report for BioC 3.11
ABCD[E]FGHIJKLMNOPQRSTUVWXYZ

INSTALL report for ensembldb on tokay2

This page was generated on 2020-10-17 11:56:31 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE ensembldb PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 548/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ensembldb 2.12.1
Johannes Rainer
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/ensembldb
Branch: RELEASE_3_11
Last Commit: ee79696
Last Changed Date: 2020-05-06 16:12:22 -0400 (Wed, 06 May 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ensembldb
Version: 2.12.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ensembldb_2.12.1.tar.gz && rm -rf ensembldb.buildbin-libdir && mkdir ensembldb.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ensembldb.buildbin-libdir ensembldb_2.12.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ensembldb_2.12.1.zip && rm ensembldb_2.12.1.tar.gz ensembldb_2.12.1.zip
StartedAt: 2020-10-16 19:17:08 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:19:55 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 166.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ensembldb_2.12.1.tar.gz && rm -rf ensembldb.buildbin-libdir && mkdir ensembldb.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ensembldb.buildbin-libdir ensembldb_2.12.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ensembldb_2.12.1.zip && rm ensembldb_2.12.1.tar.gz ensembldb_2.12.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1221k  100 1221k    0     0  6101k      0 --:--:-- --:--:-- --:--:-- 6298k

install for i386

* installing *source* package 'ensembldb' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ensembldb'
    finding HTML links ... done
    Deprecated                              html  
    EnsDb-AnnotationDbi                     html  
    EnsDb-class                             html  
    EnsDb-exonsBy                           html  
    finding level-2 HTML links ... done

    EnsDb-lengths                           html  
    EnsDb-seqlevels                         html  
    EnsDb-sequences                         html  
    EnsDb-utils                             html  
    EnsDb                                   html  
    Filter-classes                          html  
    ProteinFunctionality                    html  
    cdsToTranscript                         html  
    convertFilter                           html  
    genomeToProtein                         html  
    genomeToTranscript                      html  
    global-filters                          html  
    hasProteinData-EnsDb-method             html  
    listEnsDbs                              html  
    makeEnsemblDbPackage                    html  
    proteinToGenome                         html  
    proteinToTranscript                     html  
    runEnsDbApp                             html  
    transcriptToCds                         html  
    transcriptToGenome                      html  
    transcriptToProtein                     html  
    useMySQL-EnsDb-method                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ensembldb' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ensembldb' as ensembldb_2.12.1.zip
* DONE (ensembldb)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'ensembldb' successfully unpacked and MD5 sums checked