Caleb Lareau
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/diffloop |
| Branch: RELEASE_3_11 |
| Last Commit: 672f933 |
| Last Changed Date: 2020-04-27 14:57:23 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:28 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE diffloop PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 475/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| diffloop 1.16.0 Caleb Lareau
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: diffloop |
| Version: 1.16.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/diffloop_1.16.0.tar.gz && rm -rf diffloop.buildbin-libdir && mkdir diffloop.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=diffloop.buildbin-libdir diffloop_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL diffloop_1.16.0.zip && rm diffloop_1.16.0.tar.gz diffloop_1.16.0.zip |
| StartedAt: 2020-10-16 18:38:39 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:41:10 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 151.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/diffloop_1.16.0.tar.gz && rm -rf diffloop.buildbin-libdir && mkdir diffloop.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=diffloop.buildbin-libdir diffloop_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL diffloop_1.16.0.zip && rm diffloop_1.16.0.tar.gz diffloop_1.16.0.zip
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install for i386
* installing *source* package 'diffloop' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'diffloop'
** help
*** installing help indices
converting help for package 'diffloop'
finding HTML links ... done
addchr html
annotateAnchors html
annotateAnchors.bed html
annotateAnchors.bigwig html
annotateLoops html
annotateLoops.dge html
bedToGRanges html
calcLDSizeFactors html
callCCDs html
computeBoundaryScores html
diffloop html
dim-loops-method html
featureTest html
filterLoops html
filterSpanningLoops html
geneinfo html
getHumanGenes html
getHumanTSS html
getMouseGenes html
getMouseTSS html
head-loops-method html
human.genes html
interchromosomal html
intrachromosomal html
keepCTCFloops html
keepEPloops html
loopAssoc html
loopDistancePlot html
loopGenes html
loopMetrics html
loopPlot html
loopWidth html
loops-class html
loops.small html
loopsMake html
loopsMake.mango html
loopsSubset html
mangoCorrection html
manyLoopPlots html
mergeAnchors html
numAnchors html
numLoops html
padGRanges html
pcaPlot html
plotTopLoops html
quickAssoc html
quickAssocVoom html
removeRegion html
removeSelfLoops html
rmchr html
sampleNames-loops-method html
slidingWindowTest html
splitSamples html
sub-loops-numeric-numeric-missing-method
html
subsetLoops html
subsetRegion html
subsetRegionAB html
summary-loops-method html
tail-loops-method html
topLoops html
union-loops-loops-method html
updateLDGroups html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'diffloop'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'diffloop'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'diffloop' ...
** testing if installed package can be loaded
Warning: replacing previous import 'GenomicRanges::windows' by 'grDevices::windows' when loading 'diffloop'
* MD5 sums
packaged installation of 'diffloop' as diffloop_1.16.0.zip
* DONE (diffloop)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'diffloop' successfully unpacked and MD5 sums checked