destiny 3.2.0
Philipp Angerer
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/destiny |
| Branch: RELEASE_3_11 |
| Last Commit: 90e85a4 |
| Last Changed Date: 2020-04-27 14:50:22 -0400 (Mon, 27 Apr 2020) |
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | ERROR | skipped | | |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK |  |
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | [ ERROR ] | skipped | skipped | |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data destiny
###
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* checking for file ‘destiny/DESCRIPTION’ ... OK
* preparing ‘destiny’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DPT.ipynbmeta’ using nbconvert
Error: processing vignette 'DPT.ipynbmeta' failed with diagnostics:
Running 'texi2dvi' on 'DPT.tex' failed.
BibTeX errors:
The top-level auxiliary file: DPT.aux
I couldn't open style file humannat.bst
---line 21 of file DPT.aux
: \bibstyle{humannat
: }
I'm skipping whatever remains of this command
I found no style file---while reading file DPT.aux
--- failed re-building ‘DPT.ipynbmeta’
--- re-building ‘Diffusion-Map-recap.ipynbmeta’ using nbconvert
Error: processing vignette 'Diffusion-Map-recap.ipynbmeta' failed with diagnostics:
Running 'texi2dvi' on 'Diffusion-Map-recap.tex' failed.
LaTeX errors:
! Missing number, treated as zero.
<to be read again>
F
l.164 \DeclareUnicodeCharacter{FB00}{ff}
% ff
! Missing number, treated as zero.
<to be read again>
F
l.164 \DeclareUnicodeCharacter{FB00}{ff}
% ff
! Missing number, treated as zero.
<to be read again>
F
l.164 \DeclareUnicodeCharacter{FB00}{ff}
% ff
! Missing number, treated as zero.
<to be read again>
F
l.164 \DeclareUnicodeCharacter{FB00}{ff}
% ff
! Missing number, treated as zero.
<to be read again>
F
l.164 \DeclareUnicodeCharacter{FB00}{ff}
% ff
! Missing number, treated as zero.
<to be read again>
F
l.165 \DeclareUnicodeCharacter{FB01}{fi}
% fi
! Missing number, treated as zero.
<to be read again>
F
l.165 \DeclareUnicodeCharacter{FB01}{fi}
% fi
! Missing number, treated as zero.
<to be read again>
F
l.165 \DeclareUnicodeCharacter{FB01}{fi}
% fi
! Missing number, treated as zero.
<to be read again>
F
l.165 \DeclareUnicodeCharacter{FB01}{fi}
% fi
! Missing number, treated as zero.
<to be read again>
F
l.165 \DeclareUnicodeCharacter{FB01}{fi}
% fi
! Missing number, treated as zero.
<to be read again>
F
l.166 \DeclareUnicodeCharacter{FB02}{fl}
% fl
! Missing number, treated as zero.
<to be read again>
F
l.166 \DeclareUnicodeCharacter{FB02}{fl}
% fl
! Missing number, treated as zero.
<to be read again>
F
l.166 \DeclareUnicodeCharacter{FB02}{fl}
% fl
! Missing number, treated as zero.
<to be read again>
F
l.166 \DeclareUnicodeCharacter{FB02}{fl}
% fl
! Missing number, treated as zero.
<to be read again>
F
l.166 \DeclareUnicodeCharacter{FB02}{fl}
% fl
! Missing number, treated as zero.
<to be read again>
F
l.167 \DeclareUnicodeCharacter{FB03}{ffi}
% ffi
! Missing number, treated as zero.
<to be read again>
F
l.167 \DeclareUnicodeCharacter{FB03}{ffi}
% ffi
! Missing number, treated as zero.
<to be read again>
F
l.167 \DeclareUnicodeCharacter{FB03}{ffi}
% ffi
! Missing number, treated as zero.
<to be read again>
F
l.167 \DeclareUnicodeCharacter{FB03}{ffi}
% ffi
! Missing number, treated as zero.
<to be read again>
F
l.167 \DeclareUnicodeCharacter{FB03}{ffi}
% ffi
! Missing number, treated as zero.
<to be read again>
F
l.168 \DeclareUnicodeCharacter{FB04}{ffl}
% ffl
! Missing number, treated as zero.
<to be read again>
F
l.168 \DeclareUnicodeCharacter{FB04}{ffl}
% ffl
! Missing number, treated as zero.
<to be read again>
F
l.168 \DeclareUnicodeCharacter{FB04}{ffl}
% ffl
! Missing number, treated as zero.
<to be read again>
F
l.168 \DeclareUnicodeCharacter{FB04}{ffl}
% ffl
! Missing number, treated as zero.
<to be read again>
F
l.168 \DeclareUnicodeCharacter{FB04}{ffl}
% ffl
! Missing number, treated as zero.
<to be read again>
F
l.169 \DeclareUnicodeCharacter{FB05}{st}
% ſt -- this is the long s (not f)
! Missing number, treated as zero.
<to be read again>
F
l.169 \DeclareUnicodeCharacter{FB05}{st}
% ſt -- this is the long s (not f)
! Missing number, treated as zero.
<to be read again>
F
l.169 \DeclareUnicodeCharacter{FB05}{st}
% ſt -- this is the long s (not f)
! Missing number, treated as zero.
<to be read again>
F
l.169 \DeclareUnicodeCharacter{FB05}{st}
% ſt -- this is the long s (not f)
! Missing number, treated as zero.
<to be read again>
F
l.169 \DeclareUnicodeCharacter{FB05}{st}
% ſt -- this is the long s (not f)
! Missing number, treated as zero.
<to be read again>
F
l.170 \DeclareUnicodeCharacter{FB06}{st}
% st
! Missing number, treated as zero.
<to be read again>
F
l.170 \DeclareUnicodeCharacter{FB06}{st}
% st
! Missing number, treated as zero.
<to be read again>
F
l.170 \DeclareUnicodeCharacter{FB06}{st}
% st
! Missing number, treated as zero.
<to be read again>
F
l.170 \DeclareUnicodeCharacter{FB06}{st}
% st
! Missing number, treated as zero.
<to be read again>
F
l.170 \DeclareUnicodeCharacter{FB06}{st}
% st
--- failed re-building ‘Diffusion-Map-recap.ipynbmeta’
--- re-building ‘Diffusion-Maps.ipynbmeta’ using nbconvert
Error: processing vignette 'Diffusion-Maps.ipynbmeta' failed with diagnostics:
Running 'texi2dvi' on 'Diffusion-Maps.tex' failed.
BibTeX errors:
The top-level auxiliary file: Diffusion-Maps.aux
I couldn't open style file humannat.bst
---line 55 of file Diffusion-Maps.aux
: \bibstyle{humannat
: }
I'm skipping whatever remains of this command
I found no style file---while reading file Diffusion-Maps.aux
--- failed re-building ‘Diffusion-Maps.ipynbmeta’
--- re-building ‘Gene-Relevance.ipynbmeta’ using nbconvert
Error: processing vignette 'Gene-Relevance.ipynbmeta' failed with diagnostics:
Running 'texi2dvi' on 'Gene-Relevance.tex' failed.
LaTeX errors:
! Missing number, treated as zero.
<to be read again>
F
l.164 \DeclareUnicodeCharacter{FB00}{ff}
% ff
! Missing number, treated as zero.
<to be read again>
F
l.164 \DeclareUnicodeCharacter{FB00}{ff}
% ff
! Missing number, treated as zero.
<to be read again>
F
l.164 \DeclareUnicodeCharacter{FB00}{ff}
% ff
! Missing number, treated as zero.
<to be read again>
F
l.164 \DeclareUnicodeCharacter{FB00}{ff}
% ff
! Missing number, treated as zero.
<to be read again>
F
l.164 \DeclareUnicodeCharacter{FB00}{ff}
% ff
! Missing number, treated as zero.
<to be read again>
F
l.165 \DeclareUnicodeCharacter{FB01}{fi}
% fi
! Missing number, treated as zero.
<to be read again>
F
l.165 \DeclareUnicodeCharacter{FB01}{fi}
% fi
! Missing number, treated as zero.
<to be read again>
F
l.165 \DeclareUnicodeCharacter{FB01}{fi}
% fi
! Missing number, treated as zero.
<to be read again>
F
l.165 \DeclareUnicodeCharacter{FB01}{fi}
% fi
! Missing number, treated as zero.
<to be read again>
F
l.165 \DeclareUnicodeCharacter{FB01}{fi}
% fi
! Missing number, treated as zero.
<to be read again>
F
l.166 \DeclareUnicodeCharacter{FB02}{fl}
% fl
! Missing number, treated as zero.
<to be read again>
F
l.166 \DeclareUnicodeCharacter{FB02}{fl}
% fl
! Missing number, treated as zero.
<to be read again>
F
l.166 \DeclareUnicodeCharacter{FB02}{fl}
% fl
! Missing number, treated as zero.
<to be read again>
F
l.166 \DeclareUnicodeCharacter{FB02}{fl}
% fl
! Missing number, treated as zero.
<to be read again>
F
l.166 \DeclareUnicodeCharacter{FB02}{fl}
% fl
! Missing number, treated as zero.
<to be read again>
F
l.167 \DeclareUnicodeCharacter{FB03}{ffi}
% ffi
! Missing number, treated as zero.
<to be read again>
F
l.167 \DeclareUnicodeCharacter{FB03}{ffi}
% ffi
! Missing number, treated as zero.
<to be read again>
F
l.167 \DeclareUnicodeCharacter{FB03}{ffi}
% ffi
! Missing number, treated as zero.
<to be read again>
F
l.167 \DeclareUnicodeCharacter{FB03}{ffi}
% ffi
! Missing number, treated as zero.
<to be read again>
F
l.167 \DeclareUnicodeCharacter{FB03}{ffi}
% ffi
! Missing number, treated as zero.
<to be read again>
F
l.168 \DeclareUnicodeCharacter{FB04}{ffl}
% ffl
! Missing number, treated as zero.
<to be read again>
F
l.168 \DeclareUnicodeCharacter{FB04}{ffl}
% ffl
! Missing number, treated as zero.
<to be read again>
F
l.168 \DeclareUnicodeCharacter{FB04}{ffl}
% ffl
! Missing number, treated as zero.
<to be read again>
F
l.168 \DeclareUnicodeCharacter{FB04}{ffl}
% ffl
! Missing number, treated as zero.
<to be read again>
F
l.168 \DeclareUnicodeCharacter{FB04}{ffl}
% ffl
! Missing number, treated as zero.
<to be read again>
F
l.169 \DeclareUnicodeCharacter{FB05}{st}
% ſt -- this is the long s (not f)
! Missing number, treated as zero.
<to be read again>
F
l.169 \DeclareUnicodeCharacter{FB05}{st}
% ſt -- this is the long s (not f)
! Missing number, treated as zero.
<to be read again>
F
l.169 \DeclareUnicodeCharacter{FB05}{st}
% ſt -- this is the long s (not f)
! Missing number, treated as zero.
<to be read again>
F
l.169 \DeclareUnicodeCharacter{FB05}{st}
% ſt -- this is the long s (not f)
! Missing number, treated as zero.
<to be read again>
F
l.169 \DeclareUnicodeCharacter{FB05}{st}
% ſt -- this is the long s (not f)
! Missing number, treated as zero.
<to be read again>
F
l.170 \DeclareUnicodeCharacter{FB06}{st}
% st
! Missing number, treated as zero.
<to be read again>
F
l.170 \DeclareUnicodeCharacter{FB06}{st}
% st
! Missing number, treated as zero.
<to be read again>
F
l.170 \DeclareUnicodeCharacter{FB06}{st}
% st
! Missing number, treated as zero.
<to be read again>
F
l.170 \DeclareUnicodeCharacter{FB06}{st}
% st
! Missing number, treated as zero.
<to be read again>
F
l.170 \DeclareUnicodeCharacter{FB06}{st}
% st
--- failed re-building ‘Gene-Relevance.ipynbmeta’
--- re-building ‘Global-Sigma.ipynbmeta’ using nbconvert
Error: processing vignette 'Global-Sigma.ipynbmeta' failed with diagnostics:
Running 'texi2dvi' on 'Global-Sigma.tex' failed.
BibTeX errors:
The top-level auxiliary file: Global-Sigma.aux
I couldn't open style file humannat.bst
---line 25 of file Global-Sigma.aux
: \bibstyle{humannat
: }
I'm skipping whatever remains of this command
I found no style file---while reading file Global-Sigma.aux
--- failed re-building ‘Global-Sigma.ipynbmeta’
--- re-building ‘tidyverse.ipynbmeta’ using nbconvert
Error: processing vignette 'tidyverse.ipynbmeta' failed with diagnostics:
Running 'texi2dvi' on 'tidyverse.tex' failed.
LaTeX errors:
! Missing number, treated as zero.
<to be read again>
F
l.164 \DeclareUnicodeCharacter{FB00}{ff}
% ff
! Missing number, treated as zero.
<to be read again>
F
l.164 \DeclareUnicodeCharacter{FB00}{ff}
% ff
! Missing number, treated as zero.
<to be read again>
F
l.164 \DeclareUnicodeCharacter{FB00}{ff}
% ff
! Missing number, treated as zero.
<to be read again>
F
l.164 \DeclareUnicodeCharacter{FB00}{ff}
% ff
! Missing number, treated as zero.
<to be read again>
F
l.164 \DeclareUnicodeCharacter{FB00}{ff}
% ff
! Missing number, treated as zero.
<to be read again>
F
l.165 \DeclareUnicodeCharacter{FB01}{fi}
% fi
! Missing number, treated as zero.
<to be read again>
F
l.165 \DeclareUnicodeCharacter{FB01}{fi}
% fi
! Missing number, treated as zero.
<to be read again>
F
l.165 \DeclareUnicodeCharacter{FB01}{fi}
% fi
! Missing number, treated as zero.
<to be read again>
F
l.165 \DeclareUnicodeCharacter{FB01}{fi}
% fi
! Missing number, treated as zero.
<to be read again>
F
l.165 \DeclareUnicodeCharacter{FB01}{fi}
% fi
! Missing number, treated as zero.
<to be read again>
F
l.166 \DeclareUnicodeCharacter{FB02}{fl}
% fl
! Missing number, treated as zero.
<to be read again>
F
l.166 \DeclareUnicodeCharacter{FB02}{fl}
% fl
! Missing number, treated as zero.
<to be read again>
F
l.166 \DeclareUnicodeCharacter{FB02}{fl}
% fl
! Missing number, treated as zero.
<to be read again>
F
l.166 \DeclareUnicodeCharacter{FB02}{fl}
% fl
! Missing number, treated as zero.
<to be read again>
F
l.166 \DeclareUnicodeCharacter{FB02}{fl}
% fl
! Missing number, treated as zero.
<to be read again>
F
l.167 \DeclareUnicodeCharacter{FB03}{ffi}
% ffi
! Missing number, treated as zero.
<to be read again>
F
l.167 \DeclareUnicodeCharacter{FB03}{ffi}
% ffi
! Missing number, treated as zero.
<to be read again>
F
l.167 \DeclareUnicodeCharacter{FB03}{ffi}
% ffi
! Missing number, treated as zero.
<to be read again>
F
l.167 \DeclareUnicodeCharacter{FB03}{ffi}
% ffi
! Missing number, treated as zero.
<to be read again>
F
l.167 \DeclareUnicodeCharacter{FB03}{ffi}
% ffi
! Missing number, treated as zero.
<to be read again>
F
l.168 \DeclareUnicodeCharacter{FB04}{ffl}
% ffl
! Missing number, treated as zero.
<to be read again>
F
l.168 \DeclareUnicodeCharacter{FB04}{ffl}
% ffl
! Missing number, treated as zero.
<to be read again>
F
l.168 \DeclareUnicodeCharacter{FB04}{ffl}
% ffl
! Missing number, treated as zero.
<to be read again>
F
l.168 \DeclareUnicodeCharacter{FB04}{ffl}
% ffl
! Missing number, treated as zero.
<to be read again>
F
l.168 \DeclareUnicodeCharacter{FB04}{ffl}
% ffl
! Missing number, treated as zero.
<to be read again>
F
l.169 \DeclareUnicodeCharacter{FB05}{st}
% ſt -- this is the long s (not f)
! Missing number, treated as zero.
<to be read again>
F
l.169 \DeclareUnicodeCharacter{FB05}{st}
% ſt -- this is the long s (not f)
! Missing number, treated as zero.
<to be read again>
F
l.169 \DeclareUnicodeCharacter{FB05}{st}
% ſt -- this is the long s (not f)
! Missing number, treated as zero.
<to be read again>
F
l.169 \DeclareUnicodeCharacter{FB05}{st}
% ſt -- this is the long s (not f)
! Missing number, treated as zero.
<to be read again>
F
l.169 \DeclareUnicodeCharacter{FB05}{st}
% ſt -- this is the long s (not f)
! Missing number, treated as zero.
<to be read again>
F
l.170 \DeclareUnicodeCharacter{FB06}{st}
% st
! Missing number, treated as zero.
<to be read again>
F
l.170 \DeclareUnicodeCharacter{FB06}{st}
% st
! Missing number, treated as zero.
<to be read again>
F
l.170 \DeclareUnicodeCharacter{FB06}{st}
% st
! Missing number, treated as zero.
<to be read again>
F
l.170 \DeclareUnicodeCharacter{FB06}{st}
% st
! Missing number, treated as zero.
<to be read again>
F
l.170 \DeclareUnicodeCharacter{FB06}{st}
% st
--- failed re-building ‘tidyverse.ipynbmeta’
SUMMARY: processing the following files failed:
‘DPT.ipynbmeta’ ‘Diffusion-Map-recap.ipynbmeta’
‘Diffusion-Maps.ipynbmeta’ ‘Gene-Relevance.ipynbmeta’
‘Global-Sigma.ipynbmeta’ ‘tidyverse.ipynbmeta’
Error: Vignette re-building failed.
Execution halted