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INSTALL report for decompTumor2Sig on tokay2

This page was generated on 2020-10-17 11:56:25 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE decompTumor2Sig PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 435/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
decompTumor2Sig 2.4.1
Rosario M. Piro
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/decompTumor2Sig
Branch: RELEASE_3_11
Last Commit: 4d57dd7
Last Changed Date: 2020-07-27 17:31:17 -0400 (Mon, 27 Jul 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: decompTumor2Sig
Version: 2.4.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/decompTumor2Sig_2.4.1.tar.gz && rm -rf decompTumor2Sig.buildbin-libdir && mkdir decompTumor2Sig.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=decompTumor2Sig.buildbin-libdir decompTumor2Sig_2.4.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL decompTumor2Sig_2.4.1.zip && rm decompTumor2Sig_2.4.1.tar.gz decompTumor2Sig_2.4.1.zip
StartedAt: 2020-10-16 19:17:12 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:20:18 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 186.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/decompTumor2Sig_2.4.1.tar.gz && rm -rf decompTumor2Sig.buildbin-libdir && mkdir decompTumor2Sig.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=decompTumor2Sig.buildbin-libdir decompTumor2Sig_2.4.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL decompTumor2Sig_2.4.1.zip && rm decompTumor2Sig_2.4.1.tar.gz decompTumor2Sig_2.4.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2018k  100 2018k    0     0  21.8M      0 --:--:-- --:--:-- --:--:-- 23.4M

install for i386

* installing *source* package 'decompTumor2Sig' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'decompTumor2Sig'
    finding HTML links ... done
    QPforSig                                html  
    addBestSignatureToSubset                html  
    buildGenomesFromMutationData            html  
    buildSortedAlexandrovSignaturePatternList
                                            html  
    composeGenomesFromExposures             html  
    computeExplainedVariance                html  
    computeFrobeniusNorm                    html  
    computeRSS                              html  
    convAlx2Shi                             html  
    convertAlexandrov2Shiraishi             html  
    convertGenomesFromVRanges               html  
    decompTumor2Sig-package                 html  
    decomposeTumorGenomes                   html  
    determineSignatureDistances             html  
    determineTypeNumBasesAndTrDir           html  
    downgradeShiraishiSignatures            html  
    evaluateDecompositionQuality            html  
    getBestDecomp4Ksignatures               html  
    getCountData                            html  
    getFeatVectList                         html  
    getGenomesFromMutFeatData               html  
    getNumFlankingBases                     html  
    getNumSignatures                        html  
    getSampleList                           html  
    getSigFeatDist                          html  
    getSigFromEstParam                      html  
    getSigType                              html  
    getSignaturesFromEstParam               html  
    haveTrDir                               html  
    is.probability.data.frame               html  
    is.probability.data.frame.list          html  
    is.probability.matrix                   html  
    is.probability.matrix.list              html  
    is.probability.object                   html  
    is.probability.vector                   html  
    is.probability.vector.list              html  
    isAlexandrovSet                         html  
    isBackGround                            html  
    isEstParamObject                        html  
    isExposureSet                           html  
    isMutFeatDataObject                     html  
    isShiraishiSet                          html  
    isSignatureSet                          html  
    mapSignatureSets                        html  
    plotAlexandrovModel                     html  
    plotDecomposedContribution              html  
    plotExplainedVariance                   html  
    plotMutationDistribution                html  
    plotShiraishiModel                      html  
    processMultipleSigSets                  html  
    readAlexandrovSignatures                html  
    readGenomesFromMPF                      html  
    readGenomesFromVCF                      html  
    readShiraishiSignatures                 html  
    roundIntegerSum                         html  
    sameSignatureFormat                     html  
    setNames4ShiraishiTable                 html  
    setNumFlankingBases                     html  
    setSigFeatDist                          html  
    setSigType                              html  
    setTrDir                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'decompTumor2Sig' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'decompTumor2Sig' as decompTumor2Sig_2.4.1.zip
* DONE (decompTumor2Sig)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'decompTumor2Sig' successfully unpacked and MD5 sums checked