Back to Multiple platform build/check report for BioC 3.11
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for deco on tokay2

This page was generated on 2020-10-17 11:56:25 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE deco PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 433/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
deco 1.4.1
Francisco Jose Campos Laborie
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/deco
Branch: RELEASE_3_11
Last Commit: fddd9d5
Last Changed Date: 2020-10-13 08:35:02 -0400 (Tue, 13 Oct 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: deco
Version: 1.4.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/deco_1.4.1.tar.gz && rm -rf deco.buildbin-libdir && mkdir deco.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=deco.buildbin-libdir deco_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL deco_1.4.1.zip && rm deco_1.4.1.tar.gz deco_1.4.1.zip
StartedAt: 2020-10-16 19:03:08 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:04:42 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 93.9 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/deco_1.4.1.tar.gz && rm -rf deco.buildbin-libdir && mkdir deco.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=deco.buildbin-libdir deco_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL deco_1.4.1.zip && rm deco_1.4.1.tar.gz deco_1.4.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2485k  100 2485k    0     0  8837k      0 --:--:-- --:--:-- --:--:-- 9039k

install for i386

* installing *source* package 'deco' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'deco'
    finding HTML links ... done
    ALCLdata                                html  
    AnnotateDECO                            html  
    NSCAcluster                             html  
    deco-class                              html  
    deco-package                            html  
    decoNSCA                                html  
    decoRDA                                 html  
    decoReport                              html  
    featureTable                            html  
    plotAssociationH                        html  
    plotDECOProfile                         html  
    plotGainingH                            html  
    plotHeatmapH                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'deco' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'deco' as deco_1.4.1.zip
* DONE (deco)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'deco' successfully unpacked and MD5 sums checked