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INSTALL report for cpvSNP on tokay2

This page was generated on 2020-10-17 11:56:23 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE cpvSNP PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 388/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cpvSNP 1.20.0
Caitlin McHugh
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/cpvSNP
Branch: RELEASE_3_11
Last Commit: 0236f6c
Last Changed Date: 2020-04-27 14:45:37 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: cpvSNP
Version: 1.20.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/cpvSNP_1.20.0.tar.gz && rm -rf cpvSNP.buildbin-libdir && mkdir cpvSNP.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cpvSNP.buildbin-libdir cpvSNP_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL cpvSNP_1.20.0.zip && rm cpvSNP_1.20.0.tar.gz cpvSNP_1.20.0.zip
StartedAt: 2020-10-16 19:29:32 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:31:11 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 98.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/cpvSNP_1.20.0.tar.gz && rm -rf cpvSNP.buildbin-libdir && mkdir cpvSNP.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cpvSNP.buildbin-libdir cpvSNP_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL cpvSNP_1.20.0.zip && rm cpvSNP_1.20.0.tar.gz cpvSNP_1.20.0.zip
###
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100 1759k  100 1759k    0     0  22.6M      0 --:--:-- --:--:-- --:--:-- 24.5M

install for i386

* installing *source* package 'cpvSNP' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'cpvSNP'
    finding HTML links ... done
    GLOSSIResult-class                      html  
    GLOSSIResultCollection-class            html  
    GeneSetResult-class                     html  
    GeneSetResultCollection-class           html  
    VEGASResult-class                       html  
    VEGASResultCollection-class             html  
    assocPvalBySetPlot                      html  
    createArrayData                         html  
    degreesOfFreedom-method                 html  
    exampleArrayData                        html  
    geneSetAnalysis                         html  
    geneSetName-methods                     html  
    geneSets                                html  
    geneToSNPList                           html  
    glossi                                  html  
    glossiMarginal                          html  
    pValue-method                           html  
    plotPvals                               html  
    show-methods                            html  
    simulate_chisq                          html  
    simulatedStats-method                   html  
    statistic-methods                       html  
    vegas                                   html  
    vegasMarginal                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'cpvSNP' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cpvSNP' as cpvSNP_1.20.0.zip
* DONE (cpvSNP)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'cpvSNP' successfully unpacked and MD5 sums checked