Back to Multiple platform build/check report for BioC 3.11
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for codelink on tokay2

This page was generated on 2020-10-17 11:56:21 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE codelink PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 344/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
codelink 1.56.0
Diego Diez
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/codelink
Branch: RELEASE_3_11
Last Commit: ebb3865
Last Changed Date: 2020-04-27 14:12:38 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: codelink
Version: 1.56.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/codelink_1.56.0.tar.gz && rm -rf codelink.buildbin-libdir && mkdir codelink.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=codelink.buildbin-libdir codelink_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL codelink_1.56.0.zip && rm codelink_1.56.0.tar.gz codelink_1.56.0.zip
StartedAt: 2020-10-16 17:27:41 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:29:02 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 80.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/codelink_1.56.0.tar.gz && rm -rf codelink.buildbin-libdir && mkdir codelink.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=codelink.buildbin-libdir codelink_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL codelink_1.56.0.zip && rm codelink_1.56.0.tar.gz codelink_1.56.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2407k  100 2407k    0     0  23.3M      0 --:--:-- --:--:-- --:--:-- 25.0M

install for i386

* installing *source* package 'codelink' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'codelink'
    finding HTML links ... done
    Codelink-class                          html  
    CodelinkSet-class                       html  
    finding level-2 HTML links ... done

    CodelinkSetUnique-class                 html  
    Nondocumented-objects                   html  
    SNR                                     html  
    arrayNew                                html  
    arraySize                               html  
    as.matrix.Codelink                      html  
    averageProbes                           html  
    bkgdCorrect                             html  
    codPlot                                 html  
    codelink.example                        html  
    codset                                  html  
    createWeights                           html  
    cutCV                                   html  
    decDetect                               html  
    dim.Codelink                            html  
    fc2Cond                                 html  
    imageCodelink                           html  
    logCodelink                             html  
    mergeArray                              html  
    na2false                                html  
    normalize                               html  
    plotCV                                  html  
    plotCorrelation                         html  
    plotDensities                           html  
    plotMA                                  html  
    printHead                               html  
    readCodelink                            html  
    readHeader                              html  
    readHeaderXLS                           html  
    reportCodelink                          html  
    selCV                                   html  
    writeCodelink                           html  
** building package indices
** installing vignettes
   'Codelink_Introduction.Rnw' using 'UTF-8' 
   'Codelink_Legacy.Rnw' using 'UTF-8' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'codelink' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'codelink' as codelink_1.56.0.zip
* DONE (codelink)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'codelink' successfully unpacked and MD5 sums checked