Back to Multiple platform build/check report for BioC 3.11
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for clipper on tokay2

This page was generated on 2020-10-17 11:56:18 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE clipper PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 308/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
clipper 1.28.0
Paolo Martini
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/clipper
Branch: RELEASE_3_11
Last Commit: 4179105
Last Changed Date: 2020-04-27 14:32:50 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: clipper
Version: 1.28.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/clipper_1.28.0.tar.gz && rm -rf clipper.buildbin-libdir && mkdir clipper.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=clipper.buildbin-libdir clipper_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL clipper_1.28.0.zip && rm clipper_1.28.0.tar.gz clipper_1.28.0.zip
StartedAt: 2020-10-16 19:21:12 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:23:00 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 108.7 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/clipper_1.28.0.tar.gz && rm -rf clipper.buildbin-libdir && mkdir clipper.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=clipper.buildbin-libdir clipper_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL clipper_1.28.0.zip && rm clipper_1.28.0.tar.gz clipper_1.28.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0  418k    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  418k  100  418k    0     0  6628k      0 --:--:-- --:--:-- --:--:-- 6968k

install for i386

* installing *source* package 'clipper' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'GenomicRanges' for request: 'c' when loading 'qpgraph'
** help
*** installing help indices
  converting help for package 'clipper'
    finding HTML links ... done
    clipper                                 html  
    clipperAllRoots                         html  
    cliqueMeanTest                          html  
    cliqueMixedTest                         html  
    cliquePairedTest                        html  
    cliqueVarianceTest                      html  
    deleteEdge                              html  
    easyClip                                html  
    easyLook                                html  
    getGraphEntryGenes                      html  
    getJunctionTreePaths                    html  
    nameCliques                             html  
    pathwayTest                             html  
    plotInCytoscape                         html  
    prunePaths                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'GenomicRanges' for request: 'c' when loading 'qpgraph'
** testing if installed package can be loaded from final location
No methods found in package 'GenomicRanges' for request: 'c' when loading 'qpgraph'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'clipper' ...
** testing if installed package can be loaded
No methods found in package 'GenomicRanges' for request: 'c' when loading 'qpgraph'
* MD5 sums
packaged installation of 'clipper' as clipper_1.28.0.zip
* DONE (clipper)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'clipper' successfully unpacked and MD5 sums checked