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INSTALL report for cisPath on tokay2

This page was generated on 2020-10-17 11:56:17 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE cisPath PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 302/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cisPath 1.28.0
Likun Wang
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/cisPath
Branch: RELEASE_3_11
Last Commit: 5cb7de7
Last Changed Date: 2020-04-27 14:33:08 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: cisPath
Version: 1.28.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/cisPath_1.28.0.tar.gz && rm -rf cisPath.buildbin-libdir && mkdir cisPath.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cisPath.buildbin-libdir cisPath_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL cisPath_1.28.0.zip && rm cisPath_1.28.0.tar.gz cisPath_1.28.0.zip
StartedAt: 2020-10-16 16:50:35 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 16:51:49 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 74.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/cisPath_1.28.0.tar.gz && rm -rf cisPath.buildbin-libdir && mkdir cisPath.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cisPath.buildbin-libdir cisPath_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL cisPath_1.28.0.zip && rm cisPath_1.28.0.tar.gz cisPath_1.28.0.zip
###
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  712k  100  712k    0     0  10.4M      0 --:--:-- --:--:-- --:--:-- 11.6M

install for i386

* installing *source* package 'cisPath' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c cisPath.cpp -o cisPath.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o cisPath.dll tmp.def cisPath.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/cisPath.buildbin-libdir/00LOCK-cisPath/00new/cisPath/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'cisPath'
    finding HTML links ... done
    cisPath                                 html  
    combinePPI                              html  
    easyEditor                              html  
    formatPINAPPI                           html  
    formatSIFfile                           html  
    formatSTRINGPPI                         html  
    formatiRefIndex                         html  
    getMappingFile                          html  
    networkView                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'cisPath' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c cisPath.cpp -o cisPath.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o cisPath.dll tmp.def cisPath.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/cisPath.buildbin-libdir/cisPath/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cisPath' as cisPath_1.28.0.zip
* DONE (cisPath)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'cisPath' successfully unpacked and MD5 sums checked