Back to Multiple platform build/check report for BioC 3.11
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for biotmle on tokay2

This page was generated on 2020-10-17 11:56:10 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE biotmle PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 185/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biotmle 1.12.0
Nima Hejazi
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/biotmle
Branch: RELEASE_3_11
Last Commit: 4c7d17e
Last Changed Date: 2020-04-27 15:07:19 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: biotmle
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/biotmle_1.12.0.tar.gz && rm -rf biotmle.buildbin-libdir && mkdir biotmle.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biotmle.buildbin-libdir biotmle_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL biotmle_1.12.0.zip && rm biotmle_1.12.0.tar.gz biotmle_1.12.0.zip
StartedAt: 2020-10-16 18:27:14 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:28:38 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 83.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/biotmle_1.12.0.tar.gz && rm -rf biotmle.buildbin-libdir && mkdir biotmle.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biotmle.buildbin-libdir biotmle_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL biotmle_1.12.0.zip && rm biotmle_1.12.0.tar.gz biotmle_1.12.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  286k  100  286k    0     0  4446k      0 --:--:-- --:--:-- --:--:-- 5025k

install for i386

* installing *source* package 'biotmle' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'biotmle'
    finding HTML links ... done
    bioTMLE-class                           html  
    biomarkertmle                           html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpa8aLgg/R.INSTALL17c025da3120/biotmle/man/biomarkertmle.Rd:52: file link 'BiocParallelParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpa8aLgg/R.INSTALL17c025da3120/biotmle/man/biomarkertmle.Rd:54: file link 'DoparParam' in package 'BiocParallel' does not exist and so has been treated as a topic
    data.frame_OR_EList-class               html  
    eif                                     html  
    exp_biomarkertmle                       html  
    heatmap_ic                              html  
    modtest_ic                              html  
    plot.bioTMLE                            html  
    rnaseq_ic                               html  
    toptable                                html  
    volcano_ic                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'biotmle' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biotmle' as biotmle_1.12.0.zip
* DONE (biotmle)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'biotmle' successfully unpacked and MD5 sums checked