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INSTALL report for bgafun on tokay2

This page was generated on 2020-10-17 11:56:08 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE bgafun PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 136/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bgafun 1.50.0
Iain Wallace
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/bgafun
Branch: RELEASE_3_11
Last Commit: a3ade48
Last Changed Date: 2020-04-27 14:15:51 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: bgafun
Version: 1.50.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/bgafun_1.50.0.tar.gz && rm -rf bgafun.buildbin-libdir && mkdir bgafun.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bgafun.buildbin-libdir bgafun_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL bgafun_1.50.0.zip && rm bgafun_1.50.0.tar.gz bgafun_1.50.0.zip
StartedAt: 2020-10-16 18:13:01 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:14:03 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 62.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/bgafun_1.50.0.tar.gz && rm -rf bgafun.buildbin-libdir && mkdir bgafun.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bgafun.buildbin-libdir bgafun_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL bgafun_1.50.0.zip && rm bgafun_1.50.0.tar.gz bgafun_1.50.0.zip
###
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100  157k  100  157k    0     0  1799k      0 --:--:-- --:--:-- --:--:-- 1949k

install for i386

* installing *source* package 'bgafun' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'bgafun'
    finding HTML links ... done
    Calculate_Row_Weights                   html  
    Henikoff_weights                        html  
    LDH                                     html  
    LDH.aap                                 html  
    LDH.aap.ave                             html  
    LDH.amino                               html  
    LDH.amino.gapless                       html  
    LDH.amino.pseudo                        html  
    LDH.groups                              html  
    Weight_Amino                            html  
    add_pseudo_counts                       html  
    amino_counts                            html  
    average_cols_aap                        html  
    bgafun                                  html  
    calculate_pseudo                        html  
    convertAAP.package                      html  
    convert_aln_AAP                         html  
    convert_aln_amino                       html  
    convert_amino.package                   html  
    convert_seq_AAP                         html  
    convert_seq_amino                       html  
    create_colnames_AAP                     html  
    create_colnames_amino                   html  
    create_probab                           html  
    create_profile                          html  
    create_profile_strings                  html  
    pseudo_counts                           html  
    remove_gaps                             html  
    remove_gaps_groups                      html  
    run_between_pca                         html  
    sum_20_aln                              html  
    sum_20_cols                             html  
    sum_aln                                 html  
    top_residues_2_groups                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'bgafun' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'bgafun' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'bgafun' ...
** testing if installed package can be loaded
Warning: Package 'bgafun' is deprecated and will be removed from Bioconductor
  version 3.12
* MD5 sums
packaged installation of 'bgafun' as bgafun_1.50.0.zip
* DONE (bgafun)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'bgafun' successfully unpacked and MD5 sums checked