Back to Multiple platform build/check report for BioC 3.11
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

CHECK report for anota2seq on machv2

This page was generated on 2020-10-17 11:58:03 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE anota2seq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 70/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
anota2seq 1.10.0
Christian Oertlin , Julie Lorent
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/anota2seq
Branch: RELEASE_3_11
Last Commit: 8449eaf
Last Changed Date: 2020-04-27 15:11:14 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: anota2seq
Version: 1.10.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:anota2seq.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings anota2seq_1.10.0.tar.gz
StartedAt: 2020-10-16 22:39:29 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 22:46:21 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 412.4 seconds
RetCode: 0
Status:  OK 
CheckDir: anota2seq.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:anota2seq.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings anota2seq_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/anota2seq.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘anota2seq/DESCRIPTION’ ... OK
* this is package ‘anota2seq’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘anota2seq’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                               user system elapsed
anota2seqGetQualityControl   69.267  0.328  69.688
anota2seqGetResidOutlierTest 66.261  0.300  66.716
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

anota2seq.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL anota2seq
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘anota2seq’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (anota2seq)

Tests output


Example timings

anota2seq.Rcheck/anota2seq-Ex.timings

nameusersystemelapsed
anota2seq-plots0.0010.0010.002
anota2seqAnalyze1.6350.1271.781
anota2seqDataSetFromMatrix0.1090.0050.113
anota2seqGetContrasts0.9830.0191.020
anota2seqGetCovariates1.0610.0211.101
anota2seqGetDeltaData1.0190.0201.058
anota2seqGetNormalizedData0.0670.0040.072
anota2seqGetOutput0.9240.0140.974
anota2seqGetQualityControl69.267 0.32869.688
anota2seqGetResidOutlierTest66.261 0.30066.716
anota2seqGetThresholds0.8960.0210.936
anota2seqPerformQC0.0000.0000.001
anota2seqRegModes2.5030.0572.635
anota2seqResidOutlierTest0.0000.0010.001
anota2seqRun2.4500.0352.555
anota2seqSelSigGenes0.8870.0160.920
anota2seq_data0.0190.0040.022
show-Anota2seqDataSet-method0.1990.0050.205