James W. MacDonald
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/affycoretools |
| Branch: RELEASE_3_11 |
| Last Commit: 27ba39d |
| Last Changed Date: 2020-05-06 14:13:06 -0400 (Wed, 06 May 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:03 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE affycoretools PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 27/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| affycoretools 1.60.1 James W. MacDonald
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: affycoretools |
| Version: 1.60.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/affycoretools_1.60.1.tar.gz && rm -rf affycoretools.buildbin-libdir && mkdir affycoretools.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=affycoretools.buildbin-libdir affycoretools_1.60.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL affycoretools_1.60.1.zip && rm affycoretools_1.60.1.tar.gz affycoretools_1.60.1.zip |
| StartedAt: 2020-10-16 19:35:54 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:38:10 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 135.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/affycoretools_1.60.1.tar.gz && rm -rf affycoretools.buildbin-libdir && mkdir affycoretools.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=affycoretools.buildbin-libdir affycoretools_1.60.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL affycoretools_1.60.1.zip && rm affycoretools_1.60.1.tar.gz affycoretools_1.60.1.zip
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install for i386
* installing *source* package 'affycoretools' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'affycoretools'
finding HTML links ... done
affycoretools-defunct html
affycoretools html
affystart html
annotateEset html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaUG1WX/R.INSTALL1bdc6f8c12a0/affycoretools/man/annotateEset.Rd:44: file link 'columns' in package 'AnnotationDbi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaUG1WX/R.INSTALL1bdc6f8c12a0/affycoretools/man/annotateEset.Rd:47: file link 'mapIds' in package 'AnnotationDbi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaUG1WX/R.INSTALL1bdc6f8c12a0/affycoretools/man/annotateEset.Rd:52: file link 'rma' in package 'oligo' does not exist and so has been treated as a topic
dataAndHeatmapPage html
doGlimma html
entrezLinks html
fixHeaderAndGo html
geneSetPage html
finding level-2 HTML links ... done
getCols html
getMainProbes html
gsHeatmap html
intNames html
make.cl html
makeGoGeneTable html
makeGoTable html
makeHmap html
makeImages html
makeIndices html
makeVenn html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaUG1WX/R.INSTALL1bdc6f8c12a0/affycoretools/man/makeVenn.Rd:91: file link 'glmQLFit' in package 'edgeR' does not exist and so has been treated as a topic
maplot html
mirna2mrna html
outputRomer html
pca.legend html
plotDeg html
plotPCA html
runRomer html
tableFilt html
venn4Way html
vennCounts2 html
vennInLine html
vennPage html
vennSelect2 html
writeFit html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaUG1WX/R.INSTALL1bdc6f8c12a0/affycoretools/man/writeFit.Rd:39: file link 'write.fit' in package 'limma' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'affycoretools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'affycoretools' as affycoretools_1.60.1.zip
* DONE (affycoretools)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'affycoretools' successfully unpacked and MD5 sums checked