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INSTALL report for SummarizedExperiment on tokay2

This page was generated on 2020-10-17 11:57:54 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE SummarizedExperiment PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1758/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SummarizedExperiment 1.18.2
Bioconductor Package Maintainer
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/SummarizedExperiment
Branch: RELEASE_3_11
Last Commit: e22fafe
Last Changed Date: 2020-07-09 13:43:22 -0400 (Thu, 09 Jul 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SummarizedExperiment
Version: 1.18.2
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SummarizedExperiment_1.18.2.tar.gz && rm -rf SummarizedExperiment.buildbin-libdir && mkdir SummarizedExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SummarizedExperiment.buildbin-libdir SummarizedExperiment_1.18.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SummarizedExperiment_1.18.2.zip && rm SummarizedExperiment_1.18.2.tar.gz SummarizedExperiment_1.18.2.zip
StartedAt: 2020-10-16 17:51:54 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:54:05 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 131.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SummarizedExperiment_1.18.2.tar.gz && rm -rf SummarizedExperiment.buildbin-libdir && mkdir SummarizedExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SummarizedExperiment.buildbin-libdir SummarizedExperiment_1.18.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SummarizedExperiment_1.18.2.zip && rm SummarizedExperiment_1.18.2.tar.gz SummarizedExperiment_1.18.2.zip
###
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install for i386

* installing *source* package 'SummarizedExperiment' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SummarizedExperiment'
    finding HTML links ... done
    Assays-class                            html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/Assays-class.Rd:71: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/Assays-class.Rd:72: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/Assays-class.Rd:84: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/Assays-class.Rd:119: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/Assays-class.Rd:131: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic
    RangedSummarizedExperiment-class        html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:110: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:112: file link 'DelayedMatrix' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:118: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:121: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:124: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:125: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:128: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:128: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:147: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:148: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:212: file link 'shift' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:213: file link 'isDisjoint' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:214: file link 'coverage' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:215: file link 'findOverlaps' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:216: file link 'nearest' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:260: file link 'shift' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:261: file link 'isDisjoint' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:262: file link 'coverage' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:263: file link 'findOverlaps' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:264: file link 'nearest' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/RangedSummarizedExperiment-class.Rd:267: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    SummarizedExperiment-class              html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/SummarizedExperiment-class.Rd:184: file link 'mcols' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/SummarizedExperiment-class.Rd:186: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/SummarizedExperiment-class.Rd:189: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/SummarizedExperiment-class.Rd:193: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/SummarizedExperiment-class.Rd:243: file link 'mcols' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/SummarizedExperiment-class.Rd:423: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/SummarizedExperiment-class.Rd:423: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/SummarizedExperiment-class.Rd:424: file link 'Annotated' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/SummarizedExperiment-class.Rd:426: file link 'metadata' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/SummarizedExperiment-class.Rd:427: file link 'mcols' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/SummarizedExperiment-class.Rd:431: file link 'loadHDF5SummarizedExperiment' in package 'HDF5Array' does not exist and so has been treated as a topic
    coverage-methods                        html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/coverage-methods.Rd:26: file link 'coverage' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/coverage-methods.Rd:34: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/coverage-methods.Rd:34: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/coverage-methods.Rd:40: file link 'coverage' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/coverage-methods.Rd:42: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/coverage-methods.Rd:42: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/coverage-methods.Rd:47: file link 'coverage' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/coverage-methods.Rd:55: file link 'coverage' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/coverage-methods.Rd:57: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/coverage-methods.Rd:58: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
    findOverlaps-methods                    html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/findOverlaps-methods.Rd:43: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/findOverlaps-methods.Rd:47: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/findOverlaps-methods.Rd:55: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/findOverlaps-methods.Rd:55: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/findOverlaps-methods.Rd:63: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/findOverlaps-methods.Rd:65: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/findOverlaps-methods.Rd:65: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/findOverlaps-methods.Rd:70: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/findOverlaps-methods.Rd:78: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/findOverlaps-methods.Rd:80: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/findOverlaps-methods.Rd:81: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
    inter-range-methods                     html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/inter-range-methods.Rd:30: file link 'isDisjoint' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/inter-range-methods.Rd:38: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/inter-range-methods.Rd:38: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/inter-range-methods.Rd:48: file link 'isDisjoint' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/inter-range-methods.Rd:50: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/inter-range-methods.Rd:50: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/inter-range-methods.Rd:55: file link 'isDisjoint' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/inter-range-methods.Rd:63: file link 'isDisjoint' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/inter-range-methods.Rd:65: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/inter-range-methods.Rd:66: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
    intra-range-methods                     html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/intra-range-methods.Rd:77: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/intra-range-methods.Rd:77: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/intra-range-methods.Rd:89: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/intra-range-methods.Rd:89: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/intra-range-methods.Rd:99: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/intra-range-methods.Rd:100: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
    makeSummarizedExperimentFromDataFrame   html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/makeSummarizedExperimentFromDataFrame.Rd:31: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
    makeSummarizedExperimentFromExpressionSet
                                            html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:18: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:20: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:39: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:42: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:45: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:45: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:47: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:64: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:70: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:79: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/makeSummarizedExperimentFromExpressionSet.Rd:81: file link 'TxDb' in package 'GenomicFeatures' does not exist and so has been treated as a topic
    makeSummarizedExperimentFromLoom        html  
    nearest-methods                         html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/nearest-methods.Rd:66: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/nearest-methods.Rd:79: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/nearest-methods.Rd:79: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/nearest-methods.Rd:88: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/nearest-methods.Rd:90: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/nearest-methods.Rd:90: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/nearest-methods.Rd:95: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/nearest-methods.Rd:103: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/nearest-methods.Rd:105: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpqOJAP6/R.INSTALL1acc13bf6f63/SummarizedExperiment/man/nearest-methods.Rd:106: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
    readKallisto                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SummarizedExperiment' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SummarizedExperiment' as SummarizedExperiment_1.18.2.zip
* DONE (SummarizedExperiment)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'SummarizedExperiment' successfully unpacked and MD5 sums checked