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BUILD BIN report for SharedObject on machv2

This page was generated on 2020-10-17 11:59:36 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE SharedObject PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1643/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SharedObject 1.2.2
Jiefei Wang
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/SharedObject
Branch: RELEASE_3_11
Last Commit: e3cad4d
Last Changed Date: 2020-05-06 10:20:20 -0400 (Wed, 06 May 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: SharedObject
Version: 1.2.2
Command: rm -rf SharedObject.buildbin-libdir && mkdir SharedObject.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SharedObject_1.2.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SharedObject.buildbin-libdir
StartedAt: 2020-10-17 07:58:53 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 07:59:31 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 38.1 seconds
RetCode: 0
Status:  OK 
PackageFile: SharedObject_1.2.2.tgz
PackageFileSize: 1.183 MiB

Command output

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###
### Running command:
###
###   rm -rf SharedObject.buildbin-libdir && mkdir SharedObject.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SharedObject_1.2.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SharedObject.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SharedObject.buildbin-libdir SharedObject_1.2.2.tar.gz'
>>>>>>> 

* installing *source* package ‘SharedObject’ ...
** using staged installation
** libs
rm -f "../inst/include/SharedObject/sharedMemory.h" &&\
	 rm -f "../inst/usrlib/SharedObject.a" &&\
	 mkdir -p ../inst/include&&\
	 mkdir -p ../inst/include/SharedObject&&\
	 mkdir -p ../inst/usrlib
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c C_interface.cpp -o C_interface.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c altrepRegistration.cpp -o altrepRegistration.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c sharedMemory.cpp -o sharedMemory.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c tools.cpp -o tools.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SharedObject.so C_interface.o RcppExports.o altrepRegistration.o sharedMemory.o tools.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ar -crv SharedObject.a *.o
a - C_interface.o
a - RcppExports.o
a - altrepRegistration.o
a - sharedMemory.o
a - tools.o
cp "sharedMemory.h" "../inst/include/SharedObject/"&&\
	 cp "SharedObject.a" "../inst/usrlib/"
installing to /Users/biocbuild/bbs-3.11-bioc/meat/SharedObject.buildbin-libdir/00LOCK-SharedObject/00new/SharedObject/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SharedObject)


>>>>>>> 
>>>>>>> FIXING LINKS FOR SharedObject.buildbin-libdir/SharedObject/libs/SharedObject.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "SharedObject.buildbin-libdir/SharedObject/libs/SharedObject.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "SharedObject.buildbin-libdir/SharedObject/libs/SharedObject.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "SharedObject.buildbin-libdir/SharedObject/libs/SharedObject.so"