Xiuwen Zheng
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/SeqArray |
| Branch: RELEASE_3_11 |
| Last Commit: 0628843 |
| Last Changed Date: 2020-06-15 17:39:25 -0400 (Mon, 15 Jun 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:55:43 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE SeqArray PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1625/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SeqArray 1.28.1 Xiuwen Zheng
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | [ OK ] | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: SeqArray |
| Version: 1.28.1 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL SeqArray |
| StartedAt: 2020-10-16 16:39:18 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 16:39:58 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 40.1 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL SeqArray ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘SeqArray’ ... ** using staged installation ** libs g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c ConvToGDS.cpp -o ConvToGDS.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c FileMerge.cpp -o FileMerge.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c GetData.cpp -o GetData.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c Index.cpp -o Index.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c LinkSNPRelate.cpp -o LinkSNPRelate.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c Methods.cpp -o Methods.o gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c R_SeqArray.c -o R_SeqArray.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c ReadBySample.cpp -o ReadBySample.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c ReadByUnit.cpp -o ReadByUnit.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c ReadByVariant.cpp -o ReadByVariant.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c SeqArray.cpp -o SeqArray.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c pkg_test.cpp -o pkg_test.o gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c samtools_ext.c -o samtools_ext.o gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.11-bioc/R/library/gdsfmt/include' -I/usr/local/include -fpic -g -O2 -Wall -c vectorization.c -o vectorization.o g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o SeqArray.so ConvGDS2VCF.o ConvToGDS.o ConvVCF2GDS.o FileMerge.o GetData.o Index.o LinkSNPRelate.o Methods.o R_SeqArray.o ReadBySample.o ReadByUnit.o ReadByVariant.o SeqArray.o pkg_test.o samtools_ext.o vectorization.o -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-SeqArray/00new/SeqArray/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SeqArray)