Leonard Goldstein
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/SGSeq |
| Branch: RELEASE_3_11 |
| Last Commit: 446fe43 |
| Last Changed Date: 2020-04-27 14:44:44 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:48 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE SGSeq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1642/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SGSeq 1.22.0 Leonard Goldstein
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: SGSeq |
| Version: 1.22.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SGSeq_1.22.0.tar.gz && rm -rf SGSeq.buildbin-libdir && mkdir SGSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SGSeq.buildbin-libdir SGSeq_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SGSeq_1.22.0.zip && rm SGSeq_1.22.0.tar.gz SGSeq_1.22.0.zip |
| StartedAt: 2020-10-16 19:05:56 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:07:25 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 89.2 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SGSeq_1.22.0.tar.gz && rm -rf SGSeq.buildbin-libdir && mkdir SGSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SGSeq.buildbin-libdir SGSeq_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SGSeq_1.22.0.zip && rm SGSeq_1.22.0.tar.gz SGSeq_1.22.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1373k 100 1373k 0 0 10.0M 0 --:--:-- --:--:-- --:--:-- 10.4M
install for i386
* installing *source* package 'SGSeq' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SGSeq'
finding HTML links ... done
SGFeatureCounts html
SGFeatures html
SGSegments html
SGVariantCounts html
SGVariants html
TxFeatures html
analyzeFeatures html
analyzeVariants html
annotate html
annotateSGVariants html
assays html
convertToSGFeatures html
convertToTxFeatures html
exonCompatible html
exportFeatures html
filterFeatures html
findOverlapsRanges html
findSGVariants html
getBamInfo html
getSGFeatureCounts html
getSGFeatureCountsPerSample html
getSGVariantCounts html
gr html
importTranscripts html
junctionCompatible html
makeSGFeatureCounts html
makeVariantNames html
mergeTxFeatures html
plotCoverage html
plotFeatures html
plotSpliceGraph html
plotVariants html
predictCandidatesInternal html
predictCandidatesTerminal html
predictExonsInternal html
predictExonsTerminal html
predictJunctions html
predictSpliced html
predictTxFeatures html
predictTxFeaturesPerSample html
predictTxFeaturesPerStrand html
predictVariantEffects html
processTerminalExons html
removeExonsIsolated html
sgf_ann html
sgf_pred html
sgfc_ann html
sgfc_pred html
sgv_ann html
sgv_pred html
sgvc_ann html
sgvc_ann_from_bam html
sgvc_pred html
sgvc_pred_from_bam html
si html
slots html
splicesiteOverlap html
tx html
txf_ann html
txf_pred html
updateObject html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SGSeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SGSeq' as SGSeq_1.22.0.zip
* DONE (SGSeq)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'SGSeq' successfully unpacked and MD5 sums checked