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INSTALL report for SANTA on malbec2

This page was generated on 2020-10-17 11:55:40 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE SANTA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1573/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SANTA 2.26.0
Alex J. Cornish
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/SANTA
Branch: RELEASE_3_11
Last Commit: 237afb2
Last Changed Date: 2020-04-27 14:33:24 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64 [ OK ] ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: SANTA
Version: 2.26.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL SANTA
StartedAt: 2020-10-16 16:17:56 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 16:18:04 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 7.4 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL SANTA
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘SANTA’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c computenetK_fewzeros.c -o computenetK_fewzeros.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c computenetK_manyzeros.c -o computenetK_manyzeros.o
computenetK_manyzeros.c: In function ‘computenetK_manyzeros’:
computenetK_manyzeros.c:29:24: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types]
     p_which_vw_nonzero = R_alloc(n_nonzero_vertices, sizeof(int));
                        ^
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c computenodeAUK.c -o computenodeAUK.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c computeweights.c -o computeweights.o
gcc -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o SANTA.so computenetK_fewzeros.o computenetK_manyzeros.o computenodeAUK.o computeweights.o -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-SANTA/00new/SANTA/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'SANTA' is deprecated and will be removed from Bioconductor
  version 3.12
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning: Package 'SANTA' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path
* DONE (SANTA)