Mauro Castro
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/RTNduals |
| Branch: RELEASE_3_11 |
| Last Commit: 05d82af |
| Last Changed Date: 2020-08-22 13:50:41 -0400 (Sat, 22 Aug 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:59:29 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE RTNduals PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1551/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RTNduals 1.12.2 Mauro Castro
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK | |
| Package: RTNduals |
| Version: 1.12.2 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RTNduals.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RTNduals_1.12.2.tar.gz |
| StartedAt: 2020-10-17 04:54:00 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 05:02:47 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 527.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RTNduals.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RTNduals.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RTNduals_1.12.2.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/RTNduals.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RTNduals/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RTNduals’ version ‘1.12.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RTNduals’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
mbrAssociation-methods 51.024 4.204 55.331
mbrPriorEvidenceTable-methods 50.612 4.343 55.303
tni2mbrPreprocess-methods 48.834 4.294 53.200
mbrPlotDuals 47.516 3.613 51.207
mbrGet-methods 46.594 3.586 50.242
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
RTNduals.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RTNduals ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘RTNduals’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RTNduals)
RTNduals.Rcheck/tests/runTests.Rout
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("RTNduals")
-Preprocessing for input data...
--Mapping 'expData' to 'rowAnnotation'...
--Checking 'regulatoryElements' in 'rowAnnotation'...
--Checking 'expData'...
-Preprocessing complete!
-Performing permutation analysis...
--For 2 regulons...
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-Permutation analysis complete!
-Performing bootstrap analysis...
--For 2 regulons...
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-Bootstrap analysis complete!
-Applying dpi filter...
-DPI filter complete!
-Checking regulons and regulatory elements...
-Extrating inferred regulatory associations...
-Mapping network triplets between regulons...
-Assessing overlap between 2 regulons...
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-Assessing correlation between 2 regulons...
RUNIT TEST PROTOCOL -- Sat Oct 17 05:02:39 2020
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Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
RTNduals RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
Warning message:
No 'dual regulon' has been observed for the input parameters.
>
> proc.time()
user system elapsed
31.179 1.865 33.098
RTNduals.Rcheck/RTNduals-Ex.timings
| name | user | system | elapsed | |
| mbrAssociation-methods | 51.024 | 4.204 | 55.331 | |
| mbrGet-methods | 46.594 | 3.586 | 50.242 | |
| mbrPlotDuals | 47.516 | 3.613 | 51.207 | |
| mbrPlotInteraction | 0.067 | 0.002 | 0.070 | |
| mbrPriorEvidenceTable-methods | 50.612 | 4.343 | 55.303 | |
| tni2mbrPreprocess-methods | 48.834 | 4.294 | 53.200 | |