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INSTALL report for RImmPort on tokay2

This page was generated on 2020-10-17 11:57:38 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE RImmPort PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1491/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RImmPort 1.16.0
Zicheng Hu , Ravi Shankar
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/RImmPort
Branch: RELEASE_3_11
Last Commit: 6b9c031
Last Changed Date: 2020-04-27 14:54:45 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RImmPort
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/RImmPort_1.16.0.tar.gz && rm -rf RImmPort.buildbin-libdir && mkdir RImmPort.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RImmPort.buildbin-libdir RImmPort_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL RImmPort_1.16.0.zip && rm RImmPort_1.16.0.tar.gz RImmPort_1.16.0.zip
StartedAt: 2020-10-16 17:36:39 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:38:41 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 122.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/RImmPort_1.16.0.tar.gz && rm -rf RImmPort.buildbin-libdir && mkdir RImmPort.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RImmPort.buildbin-libdir RImmPort_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL RImmPort_1.16.0.zip && rm RImmPort_1.16.0.tar.gz RImmPort_1.16.0.zip
###
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100 1915k  100 1915k    0     0  23.5M      0 --:--:-- --:--:-- --:--:-- 25.6M

install for i386

* installing *source* package 'RImmPort' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RImmPort'
    finding HTML links ... done
    AE                                      html  
    APMH                                    html  
    Adverse-Events-Domain                   html  
    Associated-Persons-Medical-History-Domain
                                            html  
    CM                                      html  
    Cellular-Quantification-Domain          html  
    Concomitant-Medications-Domain          html  
    DM                                      html  
    DV                                      html  
    Demographics-Domain                     html  
    EX                                      html  
    Events-class                            html  
    Exposure-Domain                         html  
    FA                                      html  
    Findings-About-Domain                   html  
    Findings-class                          html  
    Genetics-Findings-Domain                html  
    Interventions-class                     html  
    LB                                      html  
    Laboratory-Test-Results-Domain          html  
    MH                                      html  
    Medical-History-Domain                  html  
    Nucleic-Acid-Quantification-Domain      html  
    PE                                      html  
    PF                                      html  
    Physical-Examination-Domain             html  
    Protein-Quantification-Domain           html  
    Protocol-Deviations-Domain              html  
    QS                                      html  
    Questionnaires-Domain                   html  
    RImmPort                                html  
    SR                                      html  
    SU                                      html  
    SUPP                                    html  
    SUPPDV                                  html  
    SUPPFA                                  html  
    SUPPLB                                  html  
    SUPPMH                                  html  
    SUPPPE                                  html  
    SUPPPF                                  html  
    SUPPVS                                  html  
    SUPPZA                                  html  
    SUPPZB                                  html  
    SUPPZC                                  html  
    SUPPZD                                  html  
    SV                                      html  
    Skin-Response-Domain                    html  
    SpecialPurpose-class                    html  
    Study-class                             html  
    Subject-Visits-Domain                   html  
    Substance-Use-Domain                    html  
    TA                                      html  
    TI                                      html  
    TS                                      html  
    TV                                      html  
    Titer-Assay-Results-Domain              html  
    Trial-Arms-Domain                       html  
    Trial-Inclusion-Exclusion-Criteria-Domain
                                            html  
    Trial-Summary-Domain                    html  
    Trial-Visits-Domain                     html  
    TrialDesign-class                       html  
    VS                                      html  
    Vital-Signs-Domain                      html  
    ZA                                      html  
    ZB                                      html  
    ZC                                      html  
    ZD                                      html  
    buildNewSqliteDb                        html  
    getAssayDataOfStudies                   html  
    getDomainCode                           html  
    getDomainDataOfStudies                  html  
    getListOfAssayTypes                     html  
    getListOfDomains                        html  
    getListOfStudies                        html  
    getStudiesWithSpecificAssayData         html  
    getStudiesWithSpecificDomainData        html  
    getStudy                                html  
    loadSerializedStudyData                 html  
    mergeDomainAndSupplemental              html  
    serialzeStudyData                       html  
    setImmPortDataSource                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RImmPort' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RImmPort' as RImmPort_1.16.0.zip
* DONE (RImmPort)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'RImmPort' successfully unpacked and MD5 sums checked