Simone Pallotta
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/RGMQL |
| Branch: RELEASE_3_11 |
| Last Commit: 734d3e1 |
| Last Changed Date: 2020-04-27 15:12:55 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:37 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE RGMQL PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1475/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RGMQL 1.8.0 Simone Pallotta
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped |
| Package: RGMQL |
| Version: 1.8.0 |
| Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RGMQL.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings RGMQL_1.8.0.tar.gz |
| StartedAt: 2020-10-17 07:29:16 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 07:35:58 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 402.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RGMQL.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RGMQL.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings RGMQL_1.8.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/RGMQL.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RGMQL/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RGMQL' version '1.8.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RGMQL' can be installed ... OK
* checking installed package size ... NOTE
installed size is 20.4Mb
sub-directories of 1Mb or more:
example 19.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'RGMQL/R/onLoad.R':
.onLoad calls:
packageStartupMessage("Check if GMQL credentials are expired... \n")
See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
aggr-class 4.68 0.81 15.46
take 3.53 0.39 19.53
show_dataset 0.12 0.03 5.46
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
aggr-class 9.55 0.71 4.31
take 7.08 0.35 2.92
show_dataset 0.16 0.00 6.05
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.11-bioc/meat/RGMQL.Rcheck/00check.log'
for details.
RGMQL.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/RGMQL_1.8.0.tar.gz && rm -rf RGMQL.buildbin-libdir && mkdir RGMQL.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RGMQL.buildbin-libdir RGMQL_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL RGMQL_1.8.0.zip && rm RGMQL_1.8.0.tar.gz RGMQL_1.8.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 2844k 100 2844k 0 0 31.6M 0 --:--:-- --:--:-- --:--:-- 34.2M
install for i386
* installing *source* package 'RGMQL' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RGMQL'
finding HTML links ... done
aggr-class html
aggregate html
arrange html
collect html
compile_query html
condition_eval_func html
cover-param-class html
cover html
delete_dataset html
distal-class html
download_dataset html
execute html
export_gmql html
extend html
filter html
filter_and_extract html
group_by html
import_gmql html
init_gmql html
log_job html
login_gmql html
logout_gmql html
map html
merge html
operator-class html
ordering-class html
read-function html
register_gmql html
remote_processing html
run_query html
sample_metadata html
sample_region html
save_query html
select html
semijoin html
setdiff html
show_dataset html
show_jobs_list html
show_queries_list html
show_samples_list html
show_schema html
stop_gmql html
stop_job html
take html
union html
upload_dataset html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'RGMQL' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RGMQL' as RGMQL_1.8.0.zip
* DONE (RGMQL)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'RGMQL' successfully unpacked and MD5 sums checked
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RGMQL.Rcheck/examples_i386/RGMQL-Ex.timings
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RGMQL.Rcheck/examples_x64/RGMQL-Ex.timings
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