Benjamin Haibe-Kains
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/PharmacoGx |
| Branch: RELEASE_3_11 |
| Last Commit: 528b270 |
| Last Changed Date: 2020-09-03 13:39:48 -0400 (Thu, 03 Sep 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:23 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE PharmacoGx PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1301/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PharmacoGx 2.0.9 Benjamin Haibe-Kains
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: PharmacoGx |
| Version: 2.0.9 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PharmacoGx_2.0.9.tar.gz && rm -rf PharmacoGx.buildbin-libdir && mkdir PharmacoGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PharmacoGx.buildbin-libdir PharmacoGx_2.0.9.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PharmacoGx_2.0.9.zip && rm PharmacoGx_2.0.9.tar.gz PharmacoGx_2.0.9.zip |
| StartedAt: 2020-10-16 18:43:04 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:44:51 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 106.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PharmacoGx_2.0.9.tar.gz && rm -rf PharmacoGx.buildbin-libdir && mkdir PharmacoGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PharmacoGx.buildbin-libdir PharmacoGx_2.0.9.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PharmacoGx_2.0.9.zip && rm PharmacoGx_2.0.9.tar.gz PharmacoGx_2.0.9.zip
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install for i386
* installing *source* package 'PharmacoGx' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'PharmacoGx'
finding HTML links ... done
CCLEsmall html
CMAPsmall html
GDSCsmall html
HDAC_genes html
PharmacoSet-class html
PharmacoSet html
amcc html
availablePSets html
callingWaterfall html
cellInfo-set-PharmacoSet-data.frame-method
html
checkPsetStructure html
computeABC html
computeAUC html
computeAmax html
computeICn html
computeSlope html
connectivityScore html
cosinePerm html
dim-PharmacoSet-method html
dot-convertPsetMolecularProfilesToSE html
dot-resaveAllExampleDatasets html
dot-validatePsetMolecularProfilesToSEConversion
html
downloadPSet html
downloadPertSig html
drugDoseResponseCurve html
drugInfo-set html
drugInfo html
drugNames-set html
drugNames html
drugPerturbationSig html
drugSensitivitySig html
fNames-set-PharmacoSet-character-character-method
html
filterNoisyCurves html
geneDrugSensitivity html
gwc html
intersectPSet html
logLogisticRegression html
mDataNames-PharmacoSet-method html
mcc html
plot.PharmacoSig html
show-PharmacoSet-method html
show-PharmacoSig-method html
showSigAnnot html
sub-PharmacoSet-ANY-ANY-ANY-method html
subsetTo html
summarizeMolecularProfiles html
summarizeSensitivityProfiles html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PharmacoGx' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PharmacoGx' as PharmacoGx_2.0.9.zip
* DONE (PharmacoGx)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'PharmacoGx' successfully unpacked and MD5 sums checked