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INSTALL report for PGSEA on tokay2

This page was generated on 2020-10-17 11:57:23 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE PGSEA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1299/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PGSEA 1.62.0
Karl Dykema
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/PGSEA
Branch: RELEASE_3_11
Last Commit: 88302aa
Last Changed Date: 2020-04-27 14:14:56 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  ERROR 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  ERROR  OK 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  ERROR  OK 

Summary

Package: PGSEA
Version: 1.62.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PGSEA_1.62.0.tar.gz && rm -rf PGSEA.buildbin-libdir && mkdir PGSEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PGSEA.buildbin-libdir PGSEA_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PGSEA_1.62.0.zip && rm PGSEA_1.62.0.tar.gz PGSEA_1.62.0.zip
StartedAt: 2020-10-16 17:14:16 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:14:50 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 34.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PGSEA_1.62.0.tar.gz && rm -rf PGSEA.buildbin-libdir && mkdir PGSEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PGSEA.buildbin-libdir PGSEA_1.62.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PGSEA_1.62.0.zip && rm PGSEA_1.62.0.tar.gz PGSEA_1.62.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  957k  100  957k    0     0  13.9M      0 --:--:-- --:--:-- --:--:-- 15.8M

install for i386

* installing *source* package 'PGSEA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'KEGG.db' is deprecated and will be removed from Bioconductor
  version 3.12 
** help
*** installing help indices
  converting help for package 'PGSEA'
    finding HTML links ... done
    GOLUBmcs                                html  
    PGSEA                                   html  
    VAIgsc                                  html  
    VAImcs                                  html  
    aggregateExprs                          html  
    convertSmc                              html  
    editSmc                                 html  
    go2smc                                  html  
    kegg2smc                                html  
    nbEset                                  html  
    readGmt                                 html  
    readSmc                                 html  
    scanSmc                                 html  
    smcPlot                                 html  
    writeGmt                                html  
    writeSmc                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'KEGG.db' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'KEGG.db' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PGSEA' ...
** testing if installed package can be loaded
Warning: Package 'KEGG.db' is deprecated and will be removed from Bioconductor
  version 3.12
* MD5 sums
packaged installation of 'PGSEA' as PGSEA_1.62.0.zip
* DONE (PGSEA)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'PGSEA' successfully unpacked and MD5 sums checked