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INSTALL report for PAST on tokay2

This page was generated on 2020-10-17 11:57:21 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE PAST PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1268/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PAST 1.4.3
Thrash Adam
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/PAST
Branch: RELEASE_3_11
Last Commit: 421656e
Last Changed Date: 2020-07-28 11:23:39 -0400 (Tue, 28 Jul 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: PAST
Version: 1.4.3
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PAST_1.4.3.tar.gz && rm -rf PAST.buildbin-libdir && mkdir PAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PAST.buildbin-libdir PAST_1.4.3.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PAST_1.4.3.zip && rm PAST_1.4.3.tar.gz PAST_1.4.3.zip
StartedAt: 2020-10-16 18:43:59 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:44:53 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 54.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PAST_1.4.3.tar.gz && rm -rf PAST.buildbin-libdir && mkdir PAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PAST.buildbin-libdir PAST_1.4.3.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PAST_1.4.3.zip && rm PAST_1.4.3.tar.gz PAST_1.4.3.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  944k  100  944k    0     0  12.3M      0 --:--:-- --:--:-- --:--:-- 13.5M

install for i386

* installing *source* package 'PAST' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'S4Vectors::union' by 'dplyr::union' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::intersect' by 'dplyr::intersect' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setdiff' by 'dplyr::setdiff' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::first' by 'dplyr::first' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setequal' by 'dplyr::setequal' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::rename' by 'dplyr::rename' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'PAST'
** help
*** installing help indices
  converting help for package 'PAST'
    finding HTML links ... done
    assign_SNPs_to_genes                    html  
    assign_chunk                            html  
    determine_linkage                       html  
    find_pathway_significance               html  
    find_representative_SNP                 html  
    find_representative_SNP_gene_pairing    html  
    load_GWAS_data                          html  
    load_LD                                 html  
    plot_pathways                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'S4Vectors::union' by 'dplyr::union' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::intersect' by 'dplyr::intersect' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setdiff' by 'dplyr::setdiff' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::first' by 'dplyr::first' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setequal' by 'dplyr::setequal' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::rename' by 'dplyr::rename' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'PAST'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'S4Vectors::union' by 'dplyr::union' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::intersect' by 'dplyr::intersect' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setdiff' by 'dplyr::setdiff' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::first' by 'dplyr::first' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setequal' by 'dplyr::setequal' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::rename' by 'dplyr::rename' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'PAST'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PAST' ...
** testing if installed package can be loaded
Warning: replacing previous import 'S4Vectors::union' by 'dplyr::union' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::intersect' by 'dplyr::intersect' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setdiff' by 'dplyr::setdiff' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::first' by 'dplyr::first' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::setequal' by 'dplyr::setequal' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::rename' by 'dplyr::rename' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'PAST'
Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'PAST'
* MD5 sums
packaged installation of 'PAST' as PAST_1.4.3.zip
* DONE (PAST)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'PAST' successfully unpacked and MD5 sums checked