Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKLMN[O]PQRSTUVWXYZ

CHECK report for OpenStats on malbec2

This page was generated on 2020-10-17 11:55:19 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE OpenStats PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1239/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OpenStats 1.0.2
Hamed Haseli Mashhadi
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/OpenStats
Branch: RELEASE_3_11
Last Commit: fc1414f
Last Changed Date: 2020-05-06 05:39:45 -0400 (Wed, 06 May 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: OpenStats
Version: 1.0.2
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings OpenStats_1.0.2.tar.gz
StartedAt: 2020-10-17 03:50:52 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 03:53:22 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 150.2 seconds
RetCode: 0
Status:  OK 
CheckDir: OpenStats.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings OpenStats_1.0.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/OpenStats.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OpenStats/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OpenStats’ version ‘1.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OpenStats’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

OpenStats.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL OpenStats
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘OpenStats’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (OpenStats)

Tests output


Example timings

OpenStats.Rcheck/OpenStats-Ex.timings

nameusersystemelapsed
OpenStatsAnalysis2.9330.0202.989
OpenStatsBuilder000
OpenStatsComplementarySplit1.7030.0001.704
OpenStatsList2.4780.1592.856
OpenStatsReport3.8790.2744.130
plot.OpenStats1.0210.1080.829
plot.OpenStatsComplementarySplit1.8480.1091.919
plot.OpenStatsFE0.0750.0040.079
plot.OpenStatsMM0.6340.0170.638
plot.OpenStatsRR0.4430.0120.450
print.OpenStats1.0350.0390.766
print.OpenStatsComplementarySplit2.5850.1702.720
print.OpenStatsFE0.1360.0040.139
print.OpenStatsMM0.9070.0840.984
print.OpenStatsRR0.4710.0240.495
summary.OpenStats1.0290.0560.853
summary.OpenStatsComplementarySplit2.6680.1742.809
summary.OpenStatsFE0.1280.0110.138
summary.OpenStatsMM0.8930.0770.955
summary.OpenStatsRR0.4850.0210.499