Klara Kaleb
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/OmaDB |
| Branch: RELEASE_3_11 |
| Last Commit: 455a447 |
| Last Changed Date: 2020-04-27 15:12:25 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:18 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE OmaDB PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1219/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| OmaDB 2.4.0 Klara Kaleb
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: OmaDB |
| Version: 2.4.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/OmaDB_2.4.0.tar.gz && rm -rf OmaDB.buildbin-libdir && mkdir OmaDB.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmaDB.buildbin-libdir OmaDB_2.4.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL OmaDB_2.4.0.zip && rm OmaDB_2.4.0.tar.gz OmaDB_2.4.0.zip |
| StartedAt: 2020-10-16 18:54:14 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:55:22 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 68.5 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/OmaDB_2.4.0.tar.gz && rm -rf OmaDB.buildbin-libdir && mkdir OmaDB.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmaDB.buildbin-libdir OmaDB_2.4.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL OmaDB_2.4.0.zip && rm OmaDB_2.4.0.tar.gz OmaDB_2.4.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 198k 100 198k 0 0 3050k 0 --:--:-- --:--:-- --:--:-- 3419k
install for i386
* installing *source* package 'OmaDB' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'OmaDB'
finding HTML links ... done
OmaDB-deprecated html
OmaDB-package html
annotateSequence html
cash-.omadb_obj html
formatTopGO html
getAnnotation-deprecated html
getAttribute html
getData-deprecated html
getGenome html
getGenomeAlignment-deprecated html
getGenomePairs html
getHOG html
getLocus html
getOMAGroup html
getObjectAttributes html
getProtein html
getTaxonomy html
getTopGO html
getTree html
getVersion html
getXref-deprecated html
group html
hog html
mapSequence html
orthologs html
pairs html
protein html
resolveURL html
searchProtein html
sequence_annotation html
sequence_map html
setAPI html
taxonomy html
xref html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'OmaDB' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OmaDB' as OmaDB_2.4.0.zip
* DONE (OmaDB)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'OmaDB' successfully unpacked and MD5 sums checked