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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data NarrowPeaks
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* checking for file ‘NarrowPeaks/DESCRIPTION’ ... OK
* preparing ‘NarrowPeaks’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘NarrowPeaks.Rnw’ using Sweave
Loading required package: splines
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap,
    parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename,
    cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which, which.max, which.min


Attaching package: ‘S4Vectors’

The following object is masked from ‘package:base’:

    expand.grid

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Chr1 done...

Error: processing vignette 'NarrowPeaks.Rnw' failed with diagnostics:
 chunk 5 (label = narrow down enriched regions by funtional PCA) 
Error in `[.data.frame`(narrowpeaksfinal, , c(1:4, 6:9)) : 
  undefined columns selected

--- failed re-building ‘NarrowPeaks.Rnw’

SUMMARY: processing the following file failed:
  ‘NarrowPeaks.Rnw’

Error: Vignette re-building failed.
Execution halted