Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKLM[N]OPQRSTUVWXYZ

BUILD report for NOISeq on malbec2

This page was generated on 2020-10-17 11:55:16 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE NOISeq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1197/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NOISeq 2.32.0
Sonia Tarazona
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/NOISeq
Branch: RELEASE_3_11
Last Commit: 9606ea0
Last Changed Date: 2020-04-27 14:31:47 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK [ ERROR ] skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: NOISeq
Version: 2.32.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data NOISeq
StartedAt: 2020-10-16 20:39:52 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 20:40:12 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 20.3 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data NOISeq
###
##############################################################################
##############################################################################


* checking for file ‘NOISeq/DESCRIPTION’ ... OK
* preparing ‘NOISeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘NOISeq.Rnw’ using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
    clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply,
    parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame,
    basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep,
    grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax,
    pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with 'browseVignettes()'. To cite
    Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: splines
Loading required package: Matrix
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used
Warning in if (class(datosR) != "matrix") { :
  the condition has length > 1 and only the first element will be used

Error: processing vignette 'NOISeq.Rnw' failed with diagnostics:
 chunk 21 (label = fig_GC) 
Error in aggregate.data.frame(as.data.frame(x), ...) : 
  no rows to aggregate

--- failed re-building ‘NOISeq.Rnw’

SUMMARY: processing the following file failed:
  ‘NOISeq.Rnw’

Error: Vignette re-building failed.
Execution halted