| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:59:00 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE MsCoreUtils PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1135/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| MsCoreUtils 1.0.0 RforMassSpectrometry Package Maintainer
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | [ OK ] | |
| Package: MsCoreUtils |
| Version: 1.0.0 |
| Command: rm -rf MsCoreUtils.buildbin-libdir && mkdir MsCoreUtils.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MsCoreUtils_1.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R MsCoreUtils.buildbin-libdir |
| StartedAt: 2020-10-17 07:32:06 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 07:32:14 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 8.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: MsCoreUtils_1.0.0.tgz |
| PackageFileSize: 426.6 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf MsCoreUtils.buildbin-libdir && mkdir MsCoreUtils.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MsCoreUtils_1.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R MsCoreUtils.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=MsCoreUtils.buildbin-libdir MsCoreUtils_1.0.0.tar.gz' >>>>>>> * installing *source* package ‘MsCoreUtils’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c impNeighbourAvg.c -o impNeighbourAvg.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c localMaxima.c -o localMaxima.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o MsCoreUtils.so impNeighbourAvg.o init.o localMaxima.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.11-bioc/meat/MsCoreUtils.buildbin-libdir/00LOCK-MsCoreUtils/00new/MsCoreUtils/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MsCoreUtils) >>>>>>> >>>>>>> FIXING LINKS FOR MsCoreUtils.buildbin-libdir/MsCoreUtils/libs/MsCoreUtils.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "MsCoreUtils.buildbin-libdir/MsCoreUtils/libs/MsCoreUtils.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "MsCoreUtils.buildbin-libdir/MsCoreUtils/libs/MsCoreUtils.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "MsCoreUtils.buildbin-libdir/MsCoreUtils/libs/MsCoreUtils.so"