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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MoPS
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* checking for file ‘MoPS/DESCRIPTION’ ... OK
* preparing ‘MoPS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MoPS.Rnw’ using Sweave
Warning: Package 'MoPS' is deprecated and will be removed from Bioconductor
  version 3.12
1275 linear regressions will be performed. This will take < 5 minutes.
Creating test functions ....
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Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
Warning in if (class(mat) == "ExpressionSet") { :
  the condition has length > 1 and only the first element will be used
8610 linear regressions will be performed. This will take < 5 minutes.
Creating test functions ....
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Fitting of test functions to data ....
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Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
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Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
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Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
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Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
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Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
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Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
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Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
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Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
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Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
100 %
Warning in cor(vec, testfmatrix[[j]], use = "pairwise.complete.obs") :
  the standard deviation is zero
Warning in if (class(mat) == "ExpressionSet") { :
  the condition has length > 1 and only the first element will be used
108000 linear regressions will be performed. This will take < 5 minutes.
Creating test functions ....
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Error: processing vignette 'MoPS.Rnw' failed with diagnostics:
 chunk 18 
Error in ccycle[periodic.ids, ] : subscript out of bounds

--- failed re-building ‘MoPS.Rnw’

SUMMARY: processing the following file failed:
  ‘MoPS.Rnw’

Error: Vignette re-building failed.
Execution halted