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INSTALL report for MAIT on tokay2

This page was generated on 2020-10-17 11:56:59 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE MAIT PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 978/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MAIT 1.22.1
Pol Sola-Santos
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/MAIT
Branch: RELEASE_3_11
Last Commit: 851dbbc
Last Changed Date: 2020-06-15 04:45:23 -0400 (Mon, 15 Jun 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: MAIT
Version: 1.22.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/MAIT_1.22.1.tar.gz && rm -rf MAIT.buildbin-libdir && mkdir MAIT.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MAIT.buildbin-libdir MAIT_1.22.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL MAIT_1.22.1.zip && rm MAIT_1.22.1.tar.gz MAIT_1.22.1.zip
StartedAt: 2020-10-16 19:02:04 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:04:39 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 154.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/MAIT_1.22.1.tar.gz && rm -rf MAIT.buildbin-libdir && mkdir MAIT.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MAIT.buildbin-libdir MAIT_1.22.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL MAIT_1.22.1.zip && rm MAIT_1.22.1.tar.gz MAIT_1.22.1.zip
###
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install for i386

* installing *source* package 'MAIT' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning message:
replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA' 
Creating a new generic function for 'scores' in package 'MAIT'
Creating a new generic function for 'loadings' in package 'MAIT'
** help
*** installing help indices
  converting help for package 'MAIT'
    finding HTML links ... done
    Biotransformations                      html  
    Database                                html  
    FisherLSD                               html  
    LSDResults                              html  
    MAIT-class                              html  
    finding level-2 HTML links ... done

    MAIT.FeatureData-class                  html  
    MAIT.FeatureInfo-class                  html  
    MAIT.Parameters-class                   html  
    MAIT.PhenoData-class                    html  
    MAIT.RawData-class                      html  
    MAIT.Validation-class                   html  
    MAIT_dataSet                            html  
    MAITbuilder                             html  
    PCAplot3d                               html  
    PLSDA                                   html  
    SearchCand                              html  
    Validation                              html  
    annotateBiotransf                       html  
    biotransformationsTable                 html  
    classNum                                html  
    classes                                 html  
    classifRatioClasses                     html  
    featureID                               html  
    featureInfo                             html  
    featureSigID                            html  
    getScoresTable                          html  
    identifyMetabolites                     html  
    inBetween                               html  
    loadings                                html  
    metaboliteTable                         html  
    method                                  html  
    model                                   html  
    models                                  html  
    negAdducts                              html  
    ovClassifRatio                          html  
    ovClassifRatioTable                     html  
    parameters                              html  
    pcaLoadings                             html  
    pcaModel                                html  
    pcaScores                               html  
    peakAggregation                         html  
    peakAnnotation                          html  
    plotBoxplot                             html  
    plotHeatmap                             html  
    plotPCA                                 html  
    plotPLS                                 html  
    plsLoadings                             html  
    plsModel                                html  
    plsScores                               html  
    posAdducts                              html  
    project                                 html  
    pvalues                                 html  
    pvaluesCorrection                       html  
    rawData                                 html  
    removeOnePeakSpectra                    html  
    resultsPath                             html  
    retrieveSpectrum                        html  
    sampleProcessing                        html  
    scores                                  html  
    selectK                                 html  
    selectPLScomp                           html  
    sigPeaksTable                           html  
    spectralAnova                           html  
    spectralFUN                             html  
    spectralKruskal                         html  
    spectralSigFeatures                     html  
    spectralTStudent                        html  
    spectralWelch                           html  
    spectralWilcox                          html  
    successRatio                            html  
    writeExcelTable                         html  
    writeParameterTable                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MAIT' ...
** testing if installed package can be loaded
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
* MD5 sums
packaged installation of 'MAIT' as MAIT_1.22.1.zip
* DONE (MAIT)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'MAIT' successfully unpacked and MD5 sums checked