Tallulah Andrews
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/M3Drop |
| Branch: RELEASE_3_11 |
| Last Commit: 2874d8b |
| Last Changed Date: 2020-04-27 15:03:10 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:59 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE M3Drop PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 966/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| M3Drop 1.14.0 Tallulah Andrews
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: M3Drop |
| Version: 1.14.0 |
| Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:M3Drop.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings M3Drop_1.14.0.tar.gz |
| StartedAt: 2020-10-17 05:34:41 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 05:49:34 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 893.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: M3Drop.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:M3Drop.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings M3Drop_1.14.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/M3Drop.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'M3Drop/DESCRIPTION' ... OK
* this is package 'M3Drop' version '1.14.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'M3Drop' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'numDeriv'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Missing or unexported object: 'scater::exprs'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
M3DropConvertData: no visible global function definition for 'assays'
NBumiConvertData: no visible global function definition for 'assays'
bg__filter_cells: no visible binding for global variable 'x'
bg__get_extreme_residuals: no visible binding for global variable 'x'
Undefined global functions or variables:
assays x
* checking Rd files ... NOTE
prepare_Rd: NBumi_FSOther.Rd:8-10: Dropping empty section \usage
prepare_Rd: NBumi_TradDE.Rd:7-8: Dropping empty section \usage
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
NewSimulations 172.93 2.82 175.95
Imputation 109.78 0.11 109.90
M3D_getmarkers 50.14 0.12 50.26
M3D_ConverData 9.17 0.72 12.48
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
NewSimulations 196.72 1.22 198.02
Imputation 103.70 0.03 103.75
M3D_getmarkers 44.22 0.05 44.26
M3D_ConverData 6.83 0.21 7.72
Brennecke_getVariableGenes 5.58 0.23 5.81
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.11-bioc/meat/M3Drop.Rcheck/00check.log'
for details.
M3Drop.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/M3Drop_1.14.0.tar.gz && rm -rf M3Drop.buildbin-libdir && mkdir M3Drop.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=M3Drop.buildbin-libdir M3Drop_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL M3Drop_1.14.0.zip && rm M3Drop_1.14.0.tar.gz M3Drop_1.14.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 56211 100 56211 0 0 830k 0 --:--:-- --:--:-- --:--:-- 930k
install for i386
* installing *source* package 'M3Drop' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'M3Drop'
finding HTML links ... done
Brennecke_getVariableGenes html
Consensus_FS html
Fitting_Dropout_Models html
Imputation html
M3D_Clean_Data html
M3D_ConverData html
M3D_Differential_Expression html
M3D_Dropout_Models html
M3D_Expression_Heatmap html
M3D_Get_Extremes html
M3D_Get_Heatmap_Cell_Clusters html
M3D_Plotting html
M3D_Simulations html
M3D_Test_Shift html
M3D_ThreeSet_Venn html
M3D_TraditionalDE html
M3D_calc_var html
M3D_getmarkers html
M3D_horz_res html
NBumi_CheckFit html
NBumi_CoExpression html
NBumi_CompareModels html
NBumi_ConvertToInteger html
NBumi_ConvrtData html
NBumi_FSDrop html
NBumi_FSHighVar html
NBumi_FSOther html
NBumi_FitDisp html
NBumi_FitDispVsMean html
NBumi_FitModel html
NBumi_HVG html
NBumi_TradDE html
NewSimulations html
Other_FS html
PoissonUMIFeatureSelectionDropouts html
bg__fit_gamma html
bg__get_stats html
bg__mean2disp html
bg__shift_size html
bg__var_vs_drop html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'M3Drop' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'M3Drop' as M3Drop_1.14.0.zip
* DONE (M3Drop)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'M3Drop' successfully unpacked and MD5 sums checked
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M3Drop.Rcheck/examples_i386/M3Drop-Ex.timings
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M3Drop.Rcheck/examples_x64/M3Drop-Ex.timings
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