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INSTALL report for LVSmiRNA on machv2

This page was generated on 2020-10-17 11:58:49 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE LVSmiRNA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 962/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LVSmiRNA 1.38.0
Stefano Calza
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/LVSmiRNA
Branch: RELEASE_3_11
Last Commit: eef33c0
Last Changed Date: 2020-04-27 14:23:14 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64 [ OK ] ERROR  skipped  skipped 

Summary

Package: LVSmiRNA
Version: 1.38.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL LVSmiRNA
StartedAt: 2020-10-16 16:22:46 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 16:23:20 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 34.6 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL LVSmiRNA
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘LVSmiRNA’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c basic_fns.c -o basic_fns.o
basic_fns.c:146:7: warning: unused variable 'i' [-Wunused-variable]
  int i;
      ^
1 warning generated.
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c lvs_rlm.c -o lvs_rlm.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o LVSmiRNA.so basic_fns.o init.o lvs_rlm.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-LVSmiRNA/00new/LVSmiRNA/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘BiocGenerics’ for requests: ‘as.vector’, ‘unlist’ when loading ‘LVSmiRNA’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package ‘BiocGenerics’ for requests: ‘as.vector’, ‘unlist’ when loading ‘LVSmiRNA’
Warning: Package 'LVSmiRNA' is deprecated and will be removed from Bioconductor
  version 3.12
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
No methods found in package ‘BiocGenerics’ for requests: ‘as.vector’, ‘unlist’ when loading ‘LVSmiRNA’
Warning: Package 'LVSmiRNA' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path
* DONE (LVSmiRNA)