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INSTALL report for Harshlight on malbec2

This page was generated on 2020-10-17 11:54:55 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE Harshlight PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 802/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Harshlight 1.60.0
Maurizio Pellegrino
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/Harshlight
Branch: RELEASE_3_11
Last Commit: 30e3612
Last Changed Date: 2020-04-27 14:13:34 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Harshlight
Version: 1.60.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL Harshlight
StartedAt: 2020-10-16 16:38:39 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 16:38:53 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 13.7 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL Harshlight
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘Harshlight’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c Harshlight.c -o Harshlight.o
Harshlight.c: In function ‘extended_defects’:
Harshlight.c:564:20: warning: variable ‘p_num_points’ set but not used [-Wunused-but-set-variable]
   int num_points, *p_num_points; //number of points inside the median kernel
                    ^~~~~~~~~~~~
Harshlight.c: In function ‘image_dilation’:
Harshlight.c:948:10: warning: variable ‘cell_value’ set but not used [-Wunused-but-set-variable]
   double cell_value;
          ^~~~~~~~~~
Harshlight.c: In function ‘norm’:
Harshlight.c:1316:27: warning: unused variable ‘sorted2’ [-Wunused-variable]
   double *sorted; double *sorted2;
                           ^~~~~~~
Harshlight.c: In function ‘report_overall_header’:
Harshlight.c:1471:26: warning: unknown conversion type character ‘)’ in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br);
                          ^
Harshlight.c:1474:26: warning: unknown conversion type character ‘)’ in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr);
                          ^
Harshlight.c: In function ‘chip_summary’:
Harshlight.c:1532:107: warning: unknown conversion type character ‘)’ in format [-Wformat=]
   PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
                                                                                                           ^
Harshlight.c:1542:26: warning: unknown conversion type character ‘)’ in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c);
                          ^
Harshlight.c:1543:26: warning: unknown conversion type character ‘)’ in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d);
                          ^
Harshlight.c: In function ‘extended_stop’:
Harshlight.c:1555:107: warning: unknown conversion type character ‘)’ in format [-Wformat=]
   PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
                                                                                                           ^
gcc -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o Harshlight.so Harshlight.o -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-Harshlight/00new/Harshlight/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Harshlight)