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INSTALL report for FourCSeq on tokay2

This page was generated on 2020-10-17 11:56:36 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE FourCSeq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 637/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FourCSeq 1.22.1
Mike Smith
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/FourCSeq
Branch: RELEASE_3_11
Last Commit: d10b2c9
Last Changed Date: 2020-08-10 08:17:54 -0400 (Mon, 10 Aug 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: FourCSeq
Version: 1.22.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/FourCSeq_1.22.1.tar.gz && rm -rf FourCSeq.buildbin-libdir && mkdir FourCSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FourCSeq.buildbin-libdir FourCSeq_1.22.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL FourCSeq_1.22.1.zip && rm FourCSeq_1.22.1.tar.gz FourCSeq_1.22.1.zip
StartedAt: 2020-10-16 19:33:08 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:35:12 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 123.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/FourCSeq_1.22.1.tar.gz && rm -rf FourCSeq.buildbin-libdir && mkdir FourCSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FourCSeq.buildbin-libdir FourCSeq_1.22.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL FourCSeq_1.22.1.zip && rm FourCSeq_1.22.1.tar.gz FourCSeq_1.22.1.zip
###
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100 2038k  100 2038k    0     0  2527k      0 --:--:-- --:--:-- --:--:-- 2548k

install for i386

* installing *source* package 'FourCSeq' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'FourCSeq'
    finding HTML links ... done
    FourC                                   html  
    addFragments                            html  
    addPeaks                                html  
    addViewpointFrags                       html  
    combineFragEnds                         html  
    countFragmentOverlaps                   html  
    countFragmentOverlapsSecondCutter       html  
    distFitMonotone                         html  
    distFitMonotoneSymmetric                html  
    fc                                      html  
    fcf                                     html  
    findViewpointFragments                  html  
    getAllResults                           html  
    getDifferences                          html  
    getDistAroundVp                         html  
    getNormalizationFactors                 html  
    getReferenceSeq                         html  
    getZScores                              html  
    normalizeRPM                            html  
    plotDifferences                         html  
    plotFits                                html  
    plotNormalizationFactors                html  
    plotScatter                             html  
    plotZScores                             html  
    smoothCounts                            html  
    smoothHitPerCent                        html  
    writeTrackFiles                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'FourCSeq' is deprecated and will be removed from Bioconductor
  version 3.13
** testing if installed package can be loaded from final location
Warning: Package 'FourCSeq' is deprecated and will be removed from Bioconductor
  version 3.13
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'FourCSeq' ...
** testing if installed package can be loaded
Warning: Package 'FourCSeq' is deprecated and will be removed from Bioconductor
  version 3.13
* MD5 sums
packaged installation of 'FourCSeq' as FourCSeq_1.22.1.zip
* DONE (FourCSeq)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'FourCSeq' successfully unpacked and MD5 sums checked