Back to Multiple platform build/check report for BioC 3.11
ABCD[E]FGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for ExpressionView on machv2

This page was generated on 2020-10-17 11:58:28 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE ExpressionView PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 578/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ExpressionView 1.40.0
Gabor Csardi
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/ExpressionView
Branch: RELEASE_3_11
Last Commit: dc53be3
Last Changed Date: 2020-04-27 14:21:46 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: ExpressionView
Version: 1.40.0
Command: rm -rf ExpressionView.buildbin-libdir && mkdir ExpressionView.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ExpressionView_1.40.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ExpressionView.buildbin-libdir
StartedAt: 2020-10-17 07:02:48 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 07:03:30 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 41.2 seconds
RetCode: 0
Status:  OK 
PackageFile: ExpressionView_1.40.0.tgz
PackageFileSize: 1.155 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ExpressionView.buildbin-libdir && mkdir ExpressionView.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ExpressionView_1.40.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ExpressionView.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ExpressionView.buildbin-libdir ExpressionView_1.40.0.tar.gz'
>>>>>>> 

* installing *source* package ‘ExpressionView’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c order.cpp -o order.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c orderclusters.cpp -o orderclusters.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ExpressionView.so order.o orderclusters.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.11-bioc/meat/ExpressionView.buildbin-libdir/00LOCK-ExpressionView/00new/ExpressionView/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'KEGG.db' is deprecated and will be removed from Bioconductor
  version 3.12 
in method for ‘ExportEV’ with signature ‘biclusters="Biclust"’: no definition for class “Biclust”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'KEGG.db' is deprecated and will be removed from Bioconductor
  version 3.12
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning: Package 'KEGG.db' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path
* DONE (ExpressionView)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ExpressionView.buildbin-libdir/ExpressionView/libs/ExpressionView.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs/ExpressionView.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs/ExpressionView.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "ExpressionView.buildbin-libdir/ExpressionView/libs/ExpressionView.so"