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INSTALL report for DMCHMM on tokay2

This page was generated on 2020-10-17 11:56:28 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE DMCHMM PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 487/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DMCHMM 1.10.0
Farhad Shokoohi
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/DMCHMM
Branch: RELEASE_3_11
Last Commit: 2be89e1
Last Changed Date: 2020-04-27 15:09:50 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DMCHMM
Version: 1.10.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/DMCHMM_1.10.0.tar.gz && rm -rf DMCHMM.buildbin-libdir && mkdir DMCHMM.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DMCHMM.buildbin-libdir DMCHMM_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL DMCHMM_1.10.0.zip && rm DMCHMM_1.10.0.tar.gz DMCHMM_1.10.0.zip
StartedAt: 2020-10-16 18:54:10 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:55:19 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 68.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/DMCHMM_1.10.0.tar.gz && rm -rf DMCHMM.buildbin-libdir && mkdir DMCHMM.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DMCHMM.buildbin-libdir DMCHMM_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL DMCHMM_1.10.0.zip && rm DMCHMM_1.10.0.tar.gz DMCHMM_1.10.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  544k  100  544k    0     0  9149k      0 --:--:-- --:--:-- --:--:-- 10.2M

install for i386

* installing *source* package 'DMCHMM' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'DMCHMM'
** help
*** installing help indices
  converting help for package 'DMCHMM'
    finding HTML links ... done
    BSDMCs-class                            html  
    BSData-class                            html  
    finding level-2 HTML links ... done

    DMCHMM-package                          html  
    cBSDMCs-method                          html  
    cBSData-method                          html  
    combine-method                          html  
    data                                    html  
    findDMCs-method                         html  
    manhattanDMCs-method                    html  
    methHMEM-method                         html  
    methHMMCMC-method                       html  
    methLevels-method                       html  
    methReads-method                        html  
    methStates-method                       html  
    methVars-method                         html  
    params                                  html  
    qqDMCs-method                           html  
    readBismark-method                      html  
    totalReads-method                       html  
    writeBED-method                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'DMCHMM'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'DMCHMM'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DMCHMM' ...
** testing if installed package can be loaded
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'DMCHMM'
* MD5 sums
packaged installation of 'DMCHMM' as DMCHMM_1.10.0.zip
* DONE (DMCHMM)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'DMCHMM' successfully unpacked and MD5 sums checked