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INSTALL report for DEGseq on tokay2

This page was generated on 2020-10-17 11:56:26 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE DEGseq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 444/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DEGseq 1.42.0
Likun Wang
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/DEGseq
Branch: RELEASE_3_11
Last Commit: 3909472
Last Changed Date: 2020-04-27 14:20:37 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DEGseq
Version: 1.42.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/DEGseq_1.42.0.tar.gz && rm -rf DEGseq.buildbin-libdir && mkdir DEGseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEGseq.buildbin-libdir DEGseq_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL DEGseq_1.42.0.zip && rm DEGseq_1.42.0.tar.gz DEGseq_1.42.0.zip
StartedAt: 2020-10-16 17:19:26 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:20:27 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 61.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/DEGseq_1.42.0.tar.gz && rm -rf DEGseq.buildbin-libdir && mkdir DEGseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEGseq.buildbin-libdir DEGseq_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL DEGseq_1.42.0.zip && rm DEGseq_1.42.0.tar.gz DEGseq_1.42.0.zip
###
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100 1607k  100 1607k    0     0  5734k      0 --:--:-- --:--:-- --:--:-- 5868k

install for i386

* installing *source* package 'DEGseq' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c getGeneExp.cpp -o getGeneExp.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o DEGseq.dll tmp.def getGeneExp.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/DEGseq.buildbin-libdir/00LOCK-DEGseq/00new/DEGseq/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DEGseq'
    finding HTML links ... done
    DEGexp                                  html  
    DEGexp2                                 html  
    DEGseq                                  html  
    GeneExpExample1000                      html  
    GeneExpExample5000                      html  
    getGeneExp                              html  
    kidneyChr21.bed                         html  
    kidneyChr21Bowtie                       html  
    liverChr21.bed                          html  
    liverChr21Bowtie                        html  
    readGeneExp                             html  
    refFlatChr21                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DEGseq' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c getGeneExp.cpp -o getGeneExp.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o DEGseq.dll tmp.def getGeneExp.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/DEGseq.buildbin-libdir/DEGseq/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DEGseq' as DEGseq_1.42.0.zip
* DONE (DEGseq)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'DEGseq' successfully unpacked and MD5 sums checked