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INSTALL report for CopyNumberPlots on tokay2

This page was generated on 2020-10-17 11:56:22 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE CopyNumberPlots PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 371/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CopyNumberPlots 1.4.0
Bernat Gel
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/CopyNumberPlots
Branch: RELEASE_3_11
Last Commit: b314f56
Last Changed Date: 2020-04-27 15:26:10 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CopyNumberPlots
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CopyNumberPlots_1.4.0.tar.gz && rm -rf CopyNumberPlots.buildbin-libdir && mkdir CopyNumberPlots.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CopyNumberPlots.buildbin-libdir CopyNumberPlots_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CopyNumberPlots_1.4.0.zip && rm CopyNumberPlots_1.4.0.tar.gz CopyNumberPlots_1.4.0.zip
StartedAt: 2020-10-16 19:33:26 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:35:07 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 101.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CopyNumberPlots_1.4.0.tar.gz && rm -rf CopyNumberPlots.buildbin-libdir && mkdir CopyNumberPlots.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CopyNumberPlots.buildbin-libdir CopyNumberPlots_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CopyNumberPlots_1.4.0.zip && rm CopyNumberPlots_1.4.0.tar.gz CopyNumberPlots_1.4.0.zip
###
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100  184k  100  184k    0     0  2706k      0 --:--:-- --:--:-- --:--:-- 2983k

install for i386

* installing *source* package 'CopyNumberPlots' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CopyNumberPlots'
    finding HTML links ... done
    EnsemblStyle                            html  
    UCSCStyle                               html  
    Ztree2Hclust                            html  
    colByCopyNumber                         html  
    computeHclustPlotOrder                  html  
    getBAFColumn                            html  
    getChrColumn                            html  
    getColumn                               html  
    getCopyNumberColors                     html  
    getCopyNumberColumn                     html  
    getEndColumn                            html  
    getIDColumn                             html  
    getLOHColumn                            html  
    getLRRColumn                            html  
    getPosColumn                            html  
    getSegmentValueColumn                   html  
    getStartColumn                          html  
    loadCopyNumberCalls                     html  
    loadCopyNumberCallsCNVkit               html  
    loadCopyNumberCallsCnmops               html  
    loadCopyNumberCallsDECoN                html  
    loadCopyNumberCallsDNAcopy              html  
    loadCopyNumberCallsPanelcnmops          html  
    loadCopyNumberCallsSeg                  html  
    loadCopyNumberCallspennCNV              html  
    loadSNPData                             html  
    loadSNPDataDNAcopy                      html  
    loadSNPDataFromVCF                      html  
    plotBAF                                 html  
    finding level-2 HTML links ... done

    plotCopyNumberCalls                     html  
    plotCopyNumberCallsAsLines              html  
    plotCopyNumberSummary                   html  
    plotLRR                                 html  
    plotSingleCellCopyNumberCalls           html  
    plotSingleCellCopyNumberSummary         html  
    prepareLabels                           html  
    readHDF5Ztree                           html  
    removeNAs                               html  
    transformChr                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CopyNumberPlots' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CopyNumberPlots' as CopyNumberPlots_1.4.0.zip
* DONE (CopyNumberPlots)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'CopyNumberPlots' successfully unpacked and MD5 sums checked